cluster # 191

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Schistosoma mansoni
cluster # 191 cluster # 191 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_191#0 length = 413 sequences # 1

consensus_191#1 length = 367 sequences # 1

consensusID : consensus_191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGAGAGAACAAAGCAAATAATTTCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTCAAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAGGAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAAATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTCCTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG]

[+] EMBL AI975932             [TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGAGAGAACAAAGCAAATAATTTCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTCAAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAGGAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAAATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTCCTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG]




>consensus_191#0
TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGA
GAGAACAAAGCAAATAATTTCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTCA
AGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAGG
AAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAAA
TGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTCC
TCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCATA
ATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG

consensusID : consensus_191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CTCAACACAGAATTTTAAACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGTAAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATGTATGTGTAAGAAAAAAAAACAAGTTGATTGTGGTTAATTCATACACTTTCTCATTTTAATATGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAATATCATTACAAAAAGAAGAATATGATAAAGATGGGTCCAATATAATTAAGGTAACAATAAT]

[-] EMBL AI618799             [CTCAACACAGAATTTTAAACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGTAAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATGTATGTGTAAGAAAAAAAAACAAGTTGATTGTGGTTAATTCATACACTTTCTCATTTTAATATGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAATATCATTACAAAAAGAAGAATATGATAAAGATGGGTCCAATATAATTAAGGTAACAATAAT]




>consensus_191#1
CTCAACACAGAATTTTAAACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAA
AAAACACAGAGGGCCGTAAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAAT
GCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAG
CAGTAACGTACAGCAGTACTCTATGTATGTGTAAGAAAAAAAAACAAGTTGATTGTGGTT
AATTCATACACTTTCTCATTTTAATATGACAATATTTCGAAAGTATATTTTTAAGGTATT
GAAGAATATCATTACAAAAAGAAGAATATGATAAAGATGGGTCCAATATAATTAAGGTAA
CAATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_191#0      TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGA 60
consensus_191#1      -------------------------------------------CTCAACACAGAATTTTA 17
                                                                   ** * * ** *  *

consensus_191#0      GAGAACAAAGCAAATAATT-TCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTC 119
consensus_191#1      AACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGT 77
                      *           * **** * ***   *         ****** **   *  ** **  

consensus_191#0      AAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAG 179
consensus_191#1      AAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAAT 137
                     ****       *     * ** **  *  ** **     * *   * ** *  **  ** 

consensus_191#0      GAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAA 239
consensus_191#1      AAAATAAT-TATCATAATATAAG-GGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCA 195
                      ****    **  * *   *       *  *   * *    **  * **    *  ** *

consensus_191#0      ATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTC 299
consensus_191#1      GTACTCTATGTATGTGTAAGAA-AAAAAAACAAGTTGATTGTGGTTAATTCATACACTTT 254
                      *  *  *** ** * *      ******* **   **  *    *** * **     * 

consensus_191#0      CTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCAT 359
consensus_191#1      CTCATTTTAATA-TGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAAT-ATCAT 312
                     *****  ***** * * *  *   * ** * *  ******* * **  ** *** *****

consensus_191#0      AATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG-- 413
consensus_191#1      TACAAAAAGAAGAATATGATA-AAGATGGGTCCAATATAATTAAGGTAACAATAAT 367
                      * * ** *  *   *** *  ****  *    **  **    **    * **