These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGAGAGAACAAAGCAAATAATTTCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTCAAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAGGAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAAATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTCCTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG] [+] EMBL AI975932 [TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGAGAGAACAAAGCAAATAATTTCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTCAAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAGGAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAAATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTCCTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG] consensusID : consensus_191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CTCAACACAGAATTTTAAACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGTAAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATGTATGTGTAAGAAAAAAAAACAAGTTGATTGTGGTTAATTCATACACTTTCTCATTTTAATATGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAATATCATTACAAAAAGAAGAATATGATAAAGATGGGTCCAATATAATTAAGGTAACAATAAT] [-] EMBL AI618799 [CTCAACACAGAATTTTAAACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGTAAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAATAAAATAATTATCATAATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATGTATGTGTAAGAAAAAAAAACAAGTTGATTGTGGTTAATTCATACACTTTCTCATTTTAATATGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAATATCATTACAAAAAGAAGAATATGATAAAGATGGGTCCAATATAATTAAGGTAACAATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_191#0 TTTATTCAGGAATTATAACAAACTGGAAAAAAAGTGACATCGTTAAAAGAAACAAATAGA 60 consensus_191#1 -------------------------------------------CTCAACACAGAATTTTA 17 ** * * ** * * consensus_191#0 GAGAACAAAGCAAATAATT-TCAAGGGTTTAAAAACCAAAAAAACAAACAACTGGACCTC 119 consensus_191#1 AACCCTGTCATTGAGAATTGTTAAGAACTCTTTTTTTTAAAAAAAAACACAGAGGGCCGT 77 * * **** * *** * ****** ** * ** ** consensus_191#0 AAGTCCATGAGGAATTAAAAAGAAACAACAGATGAATGGATAACTAATTCTACAAGAAAG 179 consensus_191#1 AAGTTATCTCTGCCCCCATAATAATAATAAGGTGGGCCCAAATGCACTTTTTTAATGAAT 137 **** * * ** ** * ** ** * * * ** * ** ** consensus_191#0 GAAATCTCATAGAAAACCGTCTTCAAAGACAGAATATTTGTAATACTGTTCAATTGAGAA 239 consensus_191#1 AAAATAAT-TATCATAATATAAG-GGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCA 195 **** ** * * * * * * * ** * ** * ** * consensus_191#0 ATGATTAATGAATCTATTTTTTTAAAAAAAAAAACAGAGAGGCAGTAAGTTATTTCTGTC 299 consensus_191#1 GTACTCTATGTATGTGTAAGAA-AAAAAAACAAGTTGATTGTGGTTAATTCATACACTTT 254 * * *** ** * * ******* ** ** * *** * ** * consensus_191#0 CTCATAATAATAATAAGATGAGGACAAATGCACTTTTTTAATGAATAAAATAATTATCAT 359 consensus_191#1 CTCATTTTAATA-TGACAATATTTCGAAAGTATATTTTTAAGGTATTGAAGAAT-ATCAT 312 ***** ***** * * * * * ** * * ******* * ** ** *** ***** consensus_191#0 AATATAAGGGGGGTAATGTTTCAAGAAAGCAGTAACGTACAGCAGTACTCTATG-- 413 consensus_191#1 TACAAAAAGAAGAATATGATA-AAGATGGGTCCAATATAATTAAGGTAACAATAAT 367 * * ** * * *** * **** * ** ** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||