cluster # 1919

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Schistosoma mansoni
cluster # 1919 cluster # 1919 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1919#0 length = 376 sequences # 1

consensus_1919#1 length = 274 sequences # 1

consensusID : consensus_1919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAATTAAGGGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTGGCAACGTGAATACATCGC]

[+] EMBL SMAA28834            [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAATTAAGGGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTGGCAACGTGAATACATCGC]




>consensus_1919#0
ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA
ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG
TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAG
CGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT
TCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAATTAAGGGTTAT
CCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTGGC
AACGTGAATACATCGC

consensusID : consensus_1919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTTTTCTATGATGCCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTCACATGTATGAATATCATTTATCAAAATATATTTTGATT]

[+] EMBL SMAA28838            [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTTTTCTATGATGCCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTCACATGTATGAATATCATTTATCAAAATATATTTTGATT]




>consensus_1919#1
ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA
ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG
TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTTTTCTATGATGCCAT
TATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTCACAT
GTATGAATATCATTTATCAAAATATATTTTGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1919#0      ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA 60
consensus_1919#1      ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA 60
                      ************************************************************

consensus_1919#0      ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG 120
consensus_1919#1      ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG 120
                      ************************************************************

consensus_1919#0      TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAG 180
consensus_1919#1      TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTT----TTCTATGATG 176
                      ********************************************      * * *  * *

consensus_1919#0      CGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT 240
consensus_1919#1      CCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTC 236
                      *    * ** * * *      *       * **  * * *** * * * * *    *** 

consensus_1919#0      TCTCCCGGAAATGCCTTGAATCAG--CCTATTTAGACCGTTTCTTCGCCAATTAAGGGTT 298
consensus_1919#1      ACATGTATGAATATCATTTATCAAAATATATTTTGATT---------------------- 274
                       *       ***  * *  ****     ***** **                        

consensus_1919#0      ATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTG 358
consensus_1919#1      ------------------------------------------------------------
                                                                                  

consensus_1919#0      GCAACGTGAATACATCGC 376
consensus_1919#1      ------------------