These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAGCTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTAGCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCTGAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCATTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCAGTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTATGCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCATTATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTGGAGAAAATCCCTTGGAAGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGATATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAATTAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGACAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGATCTATGACTGCTTATATATATCA] [+] EMBL CD080156 [CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAGCTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTAGCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCTGAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCATTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCAGTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTATGCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCATTATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTGGAGAAAATCCCTTGGAAGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGATATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAATTAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGACAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGATCTATGACTGCTTATATATATCA] consensusID : consensus_1927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CTTTCTATATCCATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGAGTCTACCAAATATATCTTCAGATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTGGAGAAGTGTTACAAATTTACCAATTAACAAT] [-] EMBL CD141013 [CTTTCTATATCCATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGAGTCTACCAAATATATCTTCAGATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTGGAGAAGTGTTACAAATTTACCAATTAACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1927#0 CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAG 60 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 CTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTA 120 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCT 180 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCA 240 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 TTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCA 300 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTAT 360 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCAT 420 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 TATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTG 480 consensus_1927#1 ------------------------------------------------CTTTCTATATCC 12 * ** ** * consensus_1927#0 GAGAAAATCCCTTGGA-AGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGA 539 consensus_1927#1 ---ATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGA 69 * * *** * * * * **** * ** ** * ** * ******* consensus_1927#0 TATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAA 599 consensus_1927#1 GTCTACCAA--------ATATATCTTCAG-----ATTCATTCAAAACAACAAAAAAACAA 116 * *** ** ** **** ************************** consensus_1927#0 CAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAAT 659 consensus_1927#1 CAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAAT 176 ************************************************************ consensus_1927#0 AAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAAT 719 consensus_1927#1 AAAGTCTCATCATTGTTATCAACTTCCAGTACCTGG-AGAAGTGTTACAAATTTACCAAT 235 ********************************** * ********** *********** consensus_1927#0 TAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGA 779 consensus_1927#1 TAACAAT----------------------------------------------------- 242 *** ** consensus_1927#0 CAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGA 839 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 TCTATGACTGCTTATATATATCA 862 consensus_1927#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||