cluster # 1927

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Schistosoma mansoni
cluster # 1927 cluster # 1927 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1927#0 length = 862 sequences # 1

consensus_1927#1 length = 242 sequences # 1

consensusID : consensus_1927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 862
fasta sequence

                              [CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAGCTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTAGCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCTGAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCATTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCAGTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTATGCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCATTATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTGGAGAAAATCCCTTGGAAGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGATATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAATTAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGACAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGATCTATGACTGCTTATATATATCA]

[+] EMBL CD080156             [CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAGCTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTAGCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCTGAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCATTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCAGTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTATGCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCATTATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTGGAGAAAATCCCTTGGAAGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGATATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAATTAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGACAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGATCTATGACTGCTTATATATATCA]




>consensus_1927#0
CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAG
CTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTA
GCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCT
GAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCA
TTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCA
GTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTAT
GCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCAT
TATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTG
GAGAAAATCCCTTGGAAGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGAT
ATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAAC
AAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATA
AAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAATT
AAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGAC
AGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGAT
CTATGACTGCTTATATATATCA

consensusID : consensus_1927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CTTTCTATATCCATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGAGTCTACCAAATATATCTTCAGATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTGGAGAAGTGTTACAAATTTACCAATTAACAAT]

[-] EMBL CD141013             [CTTTCTATATCCATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGAGTCTACCAAATATATCTTCAGATTCATTCAAAACAACAAAAAAACAACAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAGTCTCATCATTGTTATCAACTTCCAGTACCTGGAGAAGTGTTACAAATTTACCAATTAACAAT]




>consensus_1927#1
CTTTCTATATCCATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTG
TTAAAAAGAGTCTACCAAATATATCTTCAGATTCATTCAAAACAACAAAAAAACAACAAA
ATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAATAAAG
TCTCATCATTGTTATCAACTTCCAGTACCTGGAGAAGTGTTACAAATTTACCAATTAACA
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1927#0      CTCGAGGCCAAAAATTCGGCACGAGGATGTTTGTTATTTTAACTGCATAGACTTGGGGAG 60
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      CTTGTAAAAACGATAATGTTAGCTTCACTCCCAATAAAATGTCTAGAGGCAACCATATTA 120
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GCCATTTTTCTTACACAAGGTCAAGAATACCTAAAACGTTTTACAATGTCCTTCGTTTCT 180
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GAATTCAATGGTAATGTGTTTAGACACGTTGTGCTTGGAATATACTCATCCAGTGGTTCA 240
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      TTTGGTGCATTGGGGTTGAGTCGACGAGAAAATCTGATGTATAAACCGCTTAACTTTCCA 300
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GTAATGAAAATTGTCATATTTTTATGGACTGTTTTTAATAACCGTAAATAAATTTCGTAT 360
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GCTTGTTTTTAGAGTCTATCTTTACTAATAAATAATTACACTGAAGCATATCATGGTCAT 420
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      TATCACAAATTATTAAGAGTGAAAATTGGTCTACCTATCTCACATCTACCTTACATGTTG 480
consensus_1927#1      ------------------------------------------------CTTTCTATATCC 12
                                                                      * **  ** *  

consensus_1927#0      GAGAAAATCCCTTGGA-AGGGCGTCGTTATTCCATTTAACAAAGGATATACTAAAAAAGA 539
consensus_1927#1      ---ATTACTCCTNGAATAATATTTAGTTACGAGGCTCAATTAATGTGATTGTTAAAAAGA 69
                         *  *  *** * * *     * ****      * **  ** *  **  * *******

consensus_1927#0      TATAAACAACATTTTGGATCAATATTCACGATTTATTCATTCAAAACAACAAAAAAACAA 599
consensus_1927#1      GTCTACCAA--------ATATATCTTCAG-----ATTCATTCAAAACAACAAAAAAACAA 116
                          * ***        **  ** ****      **************************

consensus_1927#0      CAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAAT 659
consensus_1927#1      CAAAATCCTTCCTATAGAAAAGTAATACGTTTAAGTATGGTTCGAAATAAATCAGACAAT 176
                      ************************************************************

consensus_1927#0      AAAGTCTCATCATTGTTATCAACTTCCAGTACCTNGGAGAAGTGTTANCAATTTACCAAT 719
consensus_1927#1      AAAGTCTCATCATTGTTATCAACTTCCAGTACCTGG-AGAAGTGTTACAAATTTACCAAT 235
                      ********************************** * **********  ***********

consensus_1927#0      TAAACATTCANAAATGGGAAGAAGCCAGACATCAACAACTCTTATCANGTACGAATTTGA 779
consensus_1927#1      TAACAAT----------------------------------------------------- 242
                      ***  **                                                     

consensus_1927#0      CAGTCATTATTTCTATCNACAATGAGAATACTTATTAGTATGTATACGAAAATTTGATGA 839
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      TCTATGACTGCTTATATATATCA 862
consensus_1927#1      -----------------------