cluster # 1935

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Schistosoma mansoni
cluster # 1935 cluster # 1935 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1935#0 length = 425 sequences # 1

consensus_1935#1 length = 131 sequences # 1

consensusID : consensus_1935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTACTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAAATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACTTACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAGATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCTATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAGTGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAACAGTTC]

[+] EMBL CD197940             [GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTACTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAAATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACTTACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAGATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCTATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAGTGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAACAGTTC]




>consensus_1935#0
GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTA
CTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAA
ATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACT
TACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAG
ATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCT
ATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAG
TGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAAC
AGTTC

consensusID : consensus_1935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [TCCGAATAGCTGTAAGTTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGAAATATTGTTTTTAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATGCAAATGATAGCGGAA]

[+] EMBL CD063129             [TCCGAATAGCTGTAAGTTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGAAATATTGTTTTTAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATGCAAATGATAGCGGAA]




>consensus_1935#1
TCCGAATAGCTGTAAGTTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGAA
ATATTGTTTTTAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATGCAAA
TGATAGCGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1935#0      GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTA 60
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      CTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAA 120
consensus_1935#1      ------------------------------------------TCCGAATA--GCTGTAAG 16
                                                                 *   ***  *   * * 

consensus_1935#0      ATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACT 180
consensus_1935#1      TTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGA-------AATATTGTTT 69
                       ***  * *    * *  * *    ** ** **    * ** *        ****    *

consensus_1935#0      TACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAG 240
consensus_1935#1      T--TAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATG---CAAATGAT 124
                      *  * *** **  * *  *     **   **  ** **  *  *   **    **   * 

consensus_1935#0      ATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCT 300
consensus_1935#1      AGCGGAA----------------------------------------------------- 131
                      * *****                                                     

consensus_1935#0      ATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAG 360
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      TGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAAC 420
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      AGTTC 425
consensus_1935#1      -----