These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 995 fasta sequence [CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTGTGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGATGTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAGACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTATTCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTTATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAATTCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCCACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGACGAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAATATCATAATAACATAATTCTCCGTGTTTTGTTATTAATCCGATTCTAACTTTTCTTTAATGTCCNCTTTCATTTATCTACATAGATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATACATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGACTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG] [+] EMBL CD080201 [CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTGTGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGATGTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAGACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTATTCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTTATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAATTCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCCACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGACGAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAATATCATAATAACATAATTCTCCGTGTTTTGTTATTAATCCGATTCTAACTTTTCTTTAATGTCCNCTTTCATTTATCTACATAGATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATACATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGACTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG] consensusID : consensus_1938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTTTATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATTAGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCTTTTCGATTTCCTTACATTTCGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG] [+] EMBL AW146508 [CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTTTATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATTAGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCTTTTCGATTTCCTTACATTTCGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1938#0 CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTG 60 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 TGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGAT 120 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 GTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAG 180 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 ACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTAT 240 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 TCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTT 300 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 ATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAAT 360 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 TCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCC 420 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 ACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGAC 480 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 GAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTT 540 consensus_1938#1 ---------------CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTT 45 ********************************************* consensus_1938#0 ATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCC 600 consensus_1938#1 ATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCC 105 ************************************************************ consensus_1938#0 TTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCC 660 consensus_1938#1 TTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCC 165 ************************************************************ consensus_1938#0 TTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATG 720 consensus_1938#1 TTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATG 225 ******************************************* **************** consensus_1938#0 CATAAATATCACCTAATCTGTTTCAA-TATCATAATAA-CATAATTCTCCGTGTTTTGTT 778 consensus_1938#1 CATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTT 285 ************************** *********** ********************* consensus_1938#0 -ATTAA-TCCGATTC-TAACTTTTCTTT---AATGTCCNCTTT--CATTTA-TCTACATA 829 consensus_1938#1 TATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATT 345 ***** ******** **** *** * * ******* **** ****** ******* consensus_1938#0 GATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATA 889 consensus_1938#1 AGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCT--TTTCGATTTCCT--TA 401 * * *** * ** * * ** **** ** **** * ** consensus_1938#0 CATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGA 949 consensus_1938#1 CATTT---CGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG--- 455 ***** ** * *** ** * * * ** ** consensus_1938#0 CTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG 995 consensus_1938#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||