cluster # 1938

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Schistosoma mansoni
cluster # 1938 cluster # 1938 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1938#0 length = 995 sequences # 1

consensus_1938#1 length = 455 sequences # 1

consensusID : consensus_1938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 995
fasta sequence

                              [CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTGTGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGATGTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAGACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTATTCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTTATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAATTCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCCACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGACGAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAATATCATAATAACATAATTCTCCGTGTTTTGTTATTAATCCGATTCTAACTTTTCTTTAATGTCCNCTTTCATTTATCTACATAGATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATACATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGACTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG]

[+] EMBL CD080201             [CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTGTGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGATGTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAGACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTATTCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTTATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAATTCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCCACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGACGAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAATATCATAATAACATAATTCTCCGTGTTTTGTTATTAATCCGATTCTAACTTTTCTTTAATGTCCNCTTTCATTTATCTACATAGATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATACATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGACTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG]




>consensus_1938#0
CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTG
TGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGAT
GTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAG
ACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTAT
TCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTT
ATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAAT
TCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCC
ACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGAC
GAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTT
ATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCC
TTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCC
TTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATG
CATAAATATCACCTAATCTGTTTCAATATCATAATAACATAATTCTCCGTGTTTTGTTAT
TAATCCGATTCTAACTTTTCTTTAATGTCCNCTTTCATTTATCTACATAGATAAGATGAT
CTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATACATTTACCTAA
TGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGACTACTCTCTAT
TCAAACTTTTATTCGAAAAATGCTGCATATCTTAG

consensusID : consensus_1938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTTTATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATTAGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCTTTTCGATTTCCTTACATTTCGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG]

[+] EMBL AW146508             [CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATGCATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTTTATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATTAGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCTTTTCGATTTCCTTACATTTCGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG]




>consensus_1938#1
CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTTATTTTCGTTTTTTTT
ACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCCTTATATATATATATT
ATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCCTTTGTCTAGTCAACA
GTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATGCATAAATATCACCTA
ATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTTTATTAAATCCGATTC
CTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATTAGAATAAAGATGATT
CTTTGTTTAAAGTTTCGAAGCATTTCTTTTCGATTTCCTTACATTTCGATACCACGGCGA
TTACATTTTTACCCTAAATGCATGTAAAAGATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1938#0      CCAGCCAGATTCGGCACGAGGAGTTACGCAGAATAGCCAAAATCAATGGCGTCAGATTTG 60
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      TGGAGTGTTGGAGCTGTCATGAGACTACTACTAACAGGTGAAAATCCAAATGAAACCGAT 120
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      GTTCAAAGAAAAAATTCAACAACTGATGAATCAATAAAACACCAATACGAAAAATCCGAG 180
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      ACTAAACAATCTAATAAATTGTCATCTACAATTAATTTCGATAATACTATACCTACTTAT 240
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      TCACAAAATCATTTAAATATTAAAAAATTGAAAAGATTTTCCAAGCCTGCAAGAAAATTT 300
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      ATATACAATTGTCTTAATCCTTCACCAAGGAAACGTGGAACAGTTGATTTTTGGCTTAAT 360
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      TCTAATTGGTTCAATTTAAATGCTGACAATGTGAATAATTTAACTTCAGTGATCATTCCC 420
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      ACAAATTTACTAAGATCATGCAAAATTGCTCTAGATCAAAAAACAGAATCATATAATGAC 480
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      GAAACAGAAGAACTACAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTT 540
consensus_1938#1      ---------------CAGTTTTCCTGATACAAATAAAACAATTATTTCTTTCCTCCCCTT 45
                                     *********************************************

consensus_1938#0      ATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCC 600
consensus_1938#1      ATTTTCGTTTTTTTTACTCCTTATATTACAAAAATGCAATTAATGACCAATAAAAATTCC 105
                      ************************************************************

consensus_1938#0      TTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCC 660
consensus_1938#1      TTATATATATATATTATTCTCTGCCTCATATGATGACATTCACAAACCCACAATTTTTCC 165
                      ************************************************************

consensus_1938#0      TTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCANGATATATCCCTCCATG 720
consensus_1938#1      TTTGTCTAGTCAACAGTAAGTGAAATATGGTTATAACACTTCAGGATATATCCCTCCATG 225
                      ******************************************* ****************

consensus_1938#0      CATAAATATCACCTAATCTGTTTCAA-TATCATAATAA-CATAATTCTCCGTGTTTTGTT 778
consensus_1938#1      CATAAATATCACCTAATCTGTTTCAAATATCATAATAAACATAATTCTCCGTGTTTTGTT 285
                      ************************** *********** *********************

consensus_1938#0      -ATTAA-TCCGATTC-TAACTTTTCTTT---AATGTCCNCTTT--CATTTA-TCTACATA 829
consensus_1938#1      TATTAAATCCGATTCCTAACCTTTTTCTTTAAATGTCCCCTTTTCCATTTAATCTACATT 345
                       ***** ******** **** *** * *   ******* ****  ****** ******* 

consensus_1938#0      GATAAGATGATCTTGTTTAAGTCGAGCATTNCTTTCATTNCTACATTCGTACACTGGATA 889
consensus_1938#1      AGAATAAAGATGATTCTTTGTTTAAAGTTTCGAAGCATTTCT--TTTCGATTTCCT--TA 401
                         *  * ***  *  **   *  *   **     **** **   ****    *    **

consensus_1938#0      CATTTACCTAATGCTGTAANGATAGTCAAGTTGATCCGAGCCCCCATACTCTTATACTGA 949
consensus_1938#1      CATTT---CGATACCACGGCGATTACATTTTTACCCTAAATGCATGTAAAAGATTAG--- 455
                      *****     ** *      ***       **   *  *   *   **      **    

consensus_1938#0      CTACTCTCTATTCAAACTTTTATTCGAAAAATGCTGCATATCTTAG 995
consensus_1938#1      ----------------------------------------------