These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CCTCGAGGCCANAATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTGTGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAATTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTGCATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTACTGGNGTTTAA] [+] EMBL CD080209 [CCTCGAGGCCANAATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTGTGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAATTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTGCATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTACTGGNGTTTAA] consensusID : consensus_1940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTCTTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAAACCGATCACTTCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA] [-] EMBL CD197186 [AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTCTTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAAACCGATCACTTCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1940#0 ------------------------------------------------------------ consensus_1940#1 AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTC 60 consensus_1940#0 -----------------------------------------------CCTCGAGGCCANA 13 consensus_1940#1 TTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAA 120 * * ** * consensus_1940#0 ATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATT 73 consensus_1940#1 ACCGATCACT--TCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATT 178 * *** *********************************************** consensus_1940#0 CATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGA 133 consensus_1940#1 CATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGA 238 ************************************************************ consensus_1940#0 AAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCT 193 consensus_1940#1 AAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCT 298 ************************************************************ consensus_1940#0 TTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTG 253 consensus_1940#1 TTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA-------------- 344 ********************************************** consensus_1940#0 TGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAA 313 consensus_1940#1 ------------------------------------------------------------ consensus_1940#0 TTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTG 373 consensus_1940#1 ------------------------------------------------------------ consensus_1940#0 CATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTAC 433 consensus_1940#1 ------------------------------------------------------------ consensus_1940#0 TGGNGTTTAA 443 consensus_1940#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||