These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACTTCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACATAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTACACTTTTAATATTTGTAAAATCAATAGATTGGTTCAATTCAGTGACAAATAATTGTCTTTCTGTTTGTTTCTTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAAATGGATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTGGGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCAACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATACTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTTTTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTTTTAAATGAATTTTTCTGGTACTTTNTAAATGTAATTTAAAATATACTGTTT] [+] EMBL CD080239 [ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACTTCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACATAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTACACTTTTAATATTTGTAAAATCAATAGATTGGTTCAATTCAGTGACAAATAATTGTCTTTCTGTTTGTTTCTTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAAATGGATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTGGGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCAACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATACTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTTTTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTTTTAAATGAATTTTTCTGGTACTTTNTAAATGTAATTTAAAATATACTGTTT] consensusID : consensus_1945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAATTAATATATACATAGTATTCAATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCAGTGGCTGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTCGTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCATGGATCGGTTGAAGTTAGACGTTAACACCGTTGGATGTCGGACAGCTCAATGGTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCGGGATCGTGGATGTGCACTGCTGAGGAGTGCCATACTAGGATGAAACAGCCTCCAAACCGTGCTTCCAGGTTTTCCATGGTGATCTGGCTTATTTATACTCATGAATTAAACTACTAAAATTACTATTATTTCCACAAACCCCGTTCTGATAAAATTCAAAGATCATGGTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATGAATTATTCAGAGATGAGTTAATTAAGCTAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTGN] [+] EMBL CD080807 [TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAATTAATATATACATAGTATTCAATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCAGTGGCTGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTCGTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCATGGATCGGTTGAAGTTAGACGTTAACACCGTTGGATGTCGGACAGCTCAATGGTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCGGGATCGTGGATGTGCACTGCTGAGGAGTGCCATACTAGGATGAAACAGCCTCCAAACCGTGCTTCCAGGTTTTCCATGGTGATCTGGCTTATTTATACTCATGAATTAAACTACTAAAATTACTATTATTTCCACAAACCCCGTTCTGATAAAATTCAAAGATCATGGTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATGAATTATTCAGAGATGAGTTAATTAAGCTAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1945#0 -ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACT 59 consensus_1945#1 TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAAT-TAATATATACATAGTATT 59 * ** * * *** * ** ** ******** ** ** * consensus_1945#0 TCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACA 119 consensus_1945#1 C----AATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCA-GTGGC 114 * ** **** * * * * * *** * * * consensus_1945#0 TAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTAC--ACTTTTAATAT 177 consensus_1945#1 TGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTC 174 * ** * *** ** * * **** * * ** ** *** consensus_1945#0 TTGTAAAATCAATAGATTGGTTCAATTCAG-TGACAAATAATTGTCTTTCTGTTTGTTTC 236 consensus_1945#1 GTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCA 234 *** *** * * * * * *** * **** ** * * ** consensus_1945#0 TTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATA 296 consensus_1945#1 TGGATCGGTTGAAGTTAGA---CGTTAACACCGTTGGATGTCGGAC----AGCTCA-ATG 286 * * * *** ** * ** ** * * * * ** **** ** consensus_1945#0 CACTGGAGAATGTGATTTATTTTCAGTCACT-GTAACTAAATATTATTTCTGTAAAAATG 355 consensus_1945#1 GTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCG 346 ** *** * * ** * * ** * * ** * * * consensus_1945#0 GATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTG 415 consensus_1945#1 GGATCGTGGATGTGCACTGCTGAGGAGTGCCAT--ACTAGGATGAAACAGCCTCCAAACC 404 * * ** * ** * * ** **** *** * ** ** * * * consensus_1945#0 GGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCA 475 consensus_1945#1 GT--GCTTCCAGGTT-TTCCATGGTGATCTGGCTTAT-TTATACTCATGAATTAA----A 456 * ** *** ** ** * * * ** * *** ** * * * consensus_1945#0 ACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATA 535 consensus_1945#1 CTACTAAAAT--TACTATTATTTCCA-CAAACCCCGTTCTGATAAAATTCAAAGATCATG 513 ******* *** *** **** * ** * ** *** ** ** *** consensus_1945#0 CTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTT 595 consensus_1945#1 GTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATG 573 * ** ** ** * * ** * * ** * * * consensus_1945#0 TTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTT 655 consensus_1945#1 AATTATTCAGAGATGAGTTAATTA-AGCTAGAACACCAGAATGGGGACTCACATACACTG 632 ** * * * * *** * * ** * * * ** * consensus_1945#0 TTAAATG-AATTT---TTCTGGTACTTTN--TAAATGTAATTT--AAAATATACTGTTT- 706 consensus_1945#1 GAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTG 692 **** **** *** * *** * ***** * **** ** ** *** consensus_1945#0 - consensus_1945#1 N 693 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||