cluster # 1951

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Schistosoma mansoni
cluster # 1951 cluster # 1951 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1951#0 length = 663 sequences # 1

consensus_1951#1 length = 360 sequences # 1

consensusID : consensus_1951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [GGTTATTCCCAGTTTAGGTTCTGAGTTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCGTTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATTCTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGAGCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGATATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAAATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACGTCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA]

[+] EMBL CD080377             [GGTTATTCCCAGTTTAGGTTCTGAGTTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCGTTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATTCTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGAGCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGATATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAAATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACGTCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA]




>consensus_1951#0
GGTTATTCCCAGTTTAGGTTCTGAGTTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTC
TGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTC
TGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGA
ATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAA
AACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAG
CCGTTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAA
ATTCTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGT
AGAGCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTT
AGATATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGAC
AAAATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAA
ACGTCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATA
TGA

consensusID : consensus_1951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCTTGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG]

[-] EMBL CD145512             [GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCTTGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG]




>consensus_1951#1
GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCT
TGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGG
TCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGC
TAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATC
TTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAAC
TCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1951#0      -------------------------------------------------------GGTTA 5
consensus_1951#1      GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCT 60
                                                                              **  

consensus_1951#0      TTCCCAGTTTAGGTTCTGAGT--TACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGG 63
consensus_1951#1      TGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGG 120
                      *    *  **    ***   *  *************************************

consensus_1951#0      TCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGC 123
consensus_1951#1      TCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGC 180
                      ************************************************************

consensus_1951#0      TAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATC 183
consensus_1951#1      TAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATC 240
                      ************************************************************

consensus_1951#0      TTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAAC 243
consensus_1951#1      TTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAAC 300
                      ************************************************************

consensus_1951#0      TCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCG 303
consensus_1951#1      TCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG 360
                      ******************************************************    **

consensus_1951#0      TTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATT 363
consensus_1951#1      ------------------------------------------------------------
                                                                                  

consensus_1951#0      CTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGA 423
consensus_1951#1      ------------------------------------------------------------
                                                                                  

consensus_1951#0      GCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGA 483
consensus_1951#1      ------------------------------------------------------------
                                                                                  

consensus_1951#0      TATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAA 543
consensus_1951#1      ------------------------------------------------------------
                                                                                  

consensus_1951#0      ATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACG 603
consensus_1951#1      ------------------------------------------------------------
                                                                                  

consensus_1951#0      TCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA 663
consensus_1951#1      ------------------------------------------------------------