cluster # 1956

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Schistosoma mansoni
cluster # 1956 cluster # 1956 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1956#0 length = 516 sequences # 1

consensus_1956#1 length = 430 sequences # 1

consensusID : consensus_1956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CGAGCCAANATTCGGCACGAGGTAAACCAGGACTCTTCAAGGATTTAGACTTAATTACAAAATTGTTGATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTTGAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAAAAGTATAAGTTCAACACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACTGTTCCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGATGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCATTATCTTGCTGATTATTTCGAATCGGACTCTTGGATTCATATGACAAACATTAATCTACCATGGTCTATTGATAAAAATACTAATAGTTCACCGGAATTCTCATCTGATGAACGNNTCATCGTCTAATCACTTTTATCANNACTCGTCG]

[+] EMBL CD080465             [CGAGCCAANATTCGGCACGAGGTAAACCAGGACTCTTCAAGGATTTAGACTTAATTACAAAATTGTTGATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTTGAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAAAAGTATAAGTTCAACACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACTGTTCCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGATGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCATTATCTTGCTGATTATTTCGAATCGGACTCTTGGATTCATATGACAAACATTAATCTACCATGGTCTATTGATAAAAATACTAATAGTTCACCGGAATTCTCATCTGATGAACGNNTCATCGTCTAATCACTTTTATCANNACTCGTCG]




>consensus_1956#0
CGAGCCAANATTCGGCACGAGGTAAACCAGGACTCTTCAAGGATTTAGACTTAATTACAA
AATTGTTGATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATG
GTACTGTTGAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAAAAGTATAA
GTTCAACACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAAT
CTGGACTGTTCCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATT
CGGTTGATGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTG
TCGATCATTATCTTGCTGATTATTTCGAATCGGACTCTTGGATTCATATGACAAACATTA
ATCTACCATGGTCTATTGATAAAAATACTAATAGTTCACCGGAATTCTCATCTGATGAAC
GNNTCATCGTCTAATCACTTTTATCANNACTCGTCG

consensusID : consensus_1956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GTACTACAGCGGATGAAGATACTTTTGACTATGAGTTCATTGACGGTGATATACATATTACATTGGAGAAGTCTAAACCAGGACTCTTCAAGGATTTACGACTTAATTACAAAATTGTTGATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTTGAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAACAAGTATAAGTTCAACACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACTGTACCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGATGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCATTATCTTGCT]

[+] EMBL CD083370             [GTACTACAGCGGATGAAGATACTTTTGACTATGAGTTCATTGACGGTGATATACATATTACATTGGAGAAGTCTAAACCAGGACTCTTCAAGGATTTACGACTTAATTACAAAATTGTTGATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTTGAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAACAAGTATAAGTTCAACACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACTGTACCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGATGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCATTATCTTGCT]




>consensus_1956#1
GTACTACAGCGGATGAAGATACTTTTGACTATGAGTTCATTGACGGTGATATACATATTA
CATTGGAGAAGTCTAAACCAGGACTCTTCAAGGATTTACGACTTAATTACAAAATTGTTG
ATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTT
GAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAACAAGTATAAGTTCAAC
ACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACT
GTACCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGA
TGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCA
TTATCTTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1956#0      ----------------------------------------------CGAGCCA-ANATTC 13
consensus_1956#1      GTACTACAGCGGATGAAGATACTTTTGACTATGAGTTCATTGACGGTGATATACATATTA 60
                                                                     **   * * *** 

consensus_1956#0      GGCACGAGG----TAAACCAGGACTCTTCAAGGATTTA-GACTTAATTACAAAATTGTTG 68
consensus_1956#1      CATTGGAGAAGTCTAAACCAGGACTCTTCAAGGATTTACGACTTAATTACAAAATTGTTG 120
                           ***     ************************* *********************

consensus_1956#0      ATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTT 128
consensus_1956#1      ATAACTCCATCTGAAGCAAAGCCTTCCAAGTGTTTGATTGAAGAATTGGATGGTACTGTT 180
                      ************************************************************

consensus_1956#0      GAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAA-AAGTATAAGTTCAAC 187
consensus_1956#1      GAACAACAAAAGTTCTGGTCATTGGATTGGTTTAGCGATTCAAACAAGTATAAGTTCAAC 240
                      ******************************************** ***************

consensus_1956#0      ACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACT 247
consensus_1956#1      ACCAGAAGATGTGATTCTGTCTAAACCAACTTATGGTTTTAGTGGTTCCAAATCTGGACT 300
                      ************************************************************

consensus_1956#0      GTTCCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGA 307
consensus_1956#1      GTACCAAGTTGAATCTGATTTAACACATGCGGTGGATCTGCCTCATCCCGATTCGGTTGA 360
                      ** *********************************************************

consensus_1956#0      TGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCA 367
consensus_1956#1      TGTTTTTAAACGATCAGAGCTTAGAAAAGTGGATGAAGAGAAGAAATTTCTTGTCGATCA 420
                      ************************************************************

consensus_1956#0      TTATCTTGCTGATTATTTCGAATCGGACTCTTGGATTCATATGACAAACATTAATCTACC 427
consensus_1956#1      TTATCTTGCT-------------------------------------------------- 430
                      **********                                                  

consensus_1956#0      ATGGTCTATTGATAAAAATACTAATAGTTCACCGGAATTCTCATCTGATGAACGNNTCAT 487
consensus_1956#1      ------------------------------------------------------------
                                                                                  

consensus_1956#0      CGTCTAATCACTTTTATCANNACTCGTCG 516
consensus_1956#1      -----------------------------