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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1967 cluster # 1967       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1967#0 length = 523 sequences # 1  
consensus_1967#1 length = 267 sequences # 1  

consensusID : consensus_1967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT]

[+] EMBL CD149493             [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT]


>consensus_1967#0 ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTG AACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAA ACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTT GGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACT AGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTAT TTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGG GTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCT CTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTC CTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT



consensusID : consensus_1967#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence
                              [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT]

[+] EMBL CD132346             [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT]


>consensus_1967#1 TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAA AAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTT GAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAA AGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGA AGATATATTCGGAATAAGTCAGTCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1967#0      ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTG 60
consensus_1967#1      --------------------------------------------------------TGTT 4
                                                                               ** 

consensus_1967#0      AACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAA 120
consensus_1967#1      TGCGTTACCTATGTCTTTTAAAAGGATAGGATGAG--AAGCAATGA-ACCGTTTCCGAAA 61
                        *  *  ** *   ***  *   *   ** * *   *** * *** *  *****  ***

consensus_1967#0      ACGTCC--AACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTT 178
consensus_1967#1      AGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACAT--GTTCACATGGTCCTA-TG 118
                      * ***    *   * ** * *     ** * *  *** **  * *  * * **  ** * 

consensus_1967#0      TTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCA 238
consensus_1967#1      TTGAAAAT----AGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCG-GCATTTC 173
                      ***  **     *  ***  **    *  ** *** *       **   *    ** *  

consensus_1967#0      CTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACT 298
consensus_1967#1      GT-GATAAAGGTGAAT--GTGCGAAGCAA--GACTTGTACCACAG-CAGTACCTTAAAAA 227
                       * *****   * ***   * ** *  **  ** * ** ***  * ****   **  *  

consensus_1967#0      ATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGAT 358
consensus_1967#1      ATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT-------------------- 267
                      ***  *  * *    ** * ** * ***   * *   ***                    

consensus_1967#0      GGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTAT 418
consensus_1967#1      ------------------------------------------------------------
                                                                                  

consensus_1967#0      CTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGG 478
consensus_1967#1      ------------------------------------------------------------
                                                                                  

consensus_1967#0      TCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT 523
consensus_1967#1      ---------------------------------------------
                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)