cluster # 198

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Schistosoma mansoni
cluster # 198 cluster # 198 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_198#0 length = 479 sequences # 1

consensus_198#1 length = 225 sequences # 1

consensusID : consensus_198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [TGAATGGCCGTTTCGTCTTATTGTGGGGCGAAAAGAAATAAAACATTGTGAACAAACTACTAACAATTTTGATTGTTTAACATATTACGATGAAATAATGAACAAATAATTCGTTTTATAACTCAATATGAAAAAAATGTCAATGCAATACAAAAACGATAATTGAATACAAATTTATTTACAAAATAGTGGTAAAATTAAGGTAAATTATTTACTTAGTATTGTTTGTTTGAATCTTCCCATTGATGTTTAGGACTGCAACTGGTCAGTCTCTAATTGTCGTATGTGCATACTGAGCGTATTGCCTCGATATAGCCTAAATTCACAAGCATTGTAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGGAAGCGCGTTTCGTCCTATTTAGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGAACTCGAACCCAGTACCTTTCGCTTCANAAGCTATC]

[+] EMBL CD201977             [TGAATGGCCGTTTCGTCTTATTGTGGGGCGAAAAGAAATAAAACATTGTGAACAAACTACTAACAATTTTGATTGTTTAACATATTACGATGAAATAATGAACAAATAATTCGTTTTATAACTCAATATGAAAAAAATGTCAATGCAATACAAAAACGATAATTGAATACAAATTTATTTACAAAATAGTGGTAAAATTAAGGTAAATTATTTACTTAGTATTGTTTGTTTGAATCTTCCCATTGATGTTTAGGACTGCAACTGGTCAGTCTCTAATTGTCGTATGTGCATACTGAGCGTATTGCCTCGATATAGCCTAAATTCACAAGCATTGTAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGGAAGCGCGTTTCGTCCTATTTAGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGAACTCGAACCCAGTACCTTTCGCTTCANAAGCTATC]




>consensus_198#0
TGAATGGCCGTTTCGTCTTATTGTGGGGCGAAAAGAAATAAAACATTGTGAACAAACTAC
TAACAATTTTGATTGTTTAACATATTACGATGAAATAATGAACAAATAATTCGTTTTATA
ACTCAATATGAAAAAAATGTCAATGCAATACAAAAACGATAATTGAATACAAATTTATTT
ACAAAATAGTGGTAAAATTAAGGTAAATTATTTACTTAGTATTGTTTGTTTGAATCTTCC
CATTGATGTTTAGGACTGCAACTGGTCAGTCTCTAATTGTCGTATGTGCATACTGAGCGT
ATTGCCTCGATATAGCCTAAATTCACAAGCATTGTAAGCAAAGATGGATAGTGGCTAGCA
GTGGAATCCAGGAAGCGCGTTTCGTCCTATTTAGGACTCGTCAGCTGGATGTACCTGCAT
CTCAGAGTTGATGTTCACTCTGGAACTCGAACCCAGTACCTTTCGCTTCANAAGCTATC

consensusID : consensus_198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCGGTACCTTTCGCTTGTGAAATAAGGCTATATCGAGGCAATATGCACAGTACGCACATGTACTAATAAGAGTCCTAAATATCAATGGGACGATTCAAGCAAACAATACTAAGTGAATTATTTCAATTACTTTACTGTTTATCTTGTCGTCCTAAGGCAAATTTGTGTCAAACCTCTCCTCTATTGTTCA]

[+] EMBL CD187812             [CATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCGGTACCTTTCGCTTGTGAAATAAGGCTATATCGAGGCAATATGCACAGTACGCACATGTACTAATAAGAGTCCTAAATATCAATGGGACGATTCAAGCAAACAATACTAAGTGAATTATTTCAATTACTTTACTGTTTATCTTGTCGTCCTAAGGCAAATTTGTGTCAAACCTCTCCTCTATTGTTCA]




>consensus_198#1
CATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCGGTACCTTTCGCTTGTGAAATAA
GGCTATATCGAGGCAATATGCACAGTACGCACATGTACTAATAAGAGTCCTAAATATCAA
TGGGACGATTCAAGCAAACAATACTAAGTGAATTATTTCAATTACTTTACTGTTTATCTT
GTCGTCCTAAGGCAAATTTGTGTCAAACCTCTCCTCTATTGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_198#0      TGAATGGCCGTTTCGTCTTATTGTGGGGCGAAAAGAAATAAAACATTGTGAACAAACTAC 60
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      TAACAATTTTGATTGTTTAACATATTACGATGAAATAATGAACAAATAATTCGTTTTATA 120
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      ACTCAATATGAAAAAAATGTCAATGCAATACAAAAACGATAATTGAATACAAATTTATTT 180
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      ACAAAATAGTGGTAAAATTAAGGTAAATTATTTACTTAGTATTGTTTGTTTGAATCTTCC 240
consensus_198#1      ----------------------------------------------CATCTCAGAGTTGA 14
                                                                     * * *   **  

consensus_198#0      CATTGATGTTTAGGACTGCAACTGGTCAGTCTCTAATTGTCGTATGTG--CATACTGAGC 298
consensus_198#1      TGTTCAC-TCTGGGACTCGAACCCGGTACCTTTCGCTTGTGAAATAAGGCTATATCGAGG 73
                       ** *  * * *****  ***  *  *   *    ****   **  *   ***  *** 

consensus_198#0      GTATTGCCTCGATATA-GCCTAAATTCACAAGCATTGTAAGCAAAGATGGATAGTGGCTA 357
consensus_198#1      CAATATGCACAGTACGCACATGTACTAATAAGAGTCCTAAATATCAATGGGACGATTCAA 133
                       **   * *  **    * *  * * * ***  *  ***  *   ****   *   * *

consensus_198#0      GCAGTGGAATCCAGGAAGCGCGTTTCGTCCTATTTAGGACTCGTCAGCTGGATGTACCTG 417
consensus_198#1      GCAAACAATACTAAGTGAATTATTTCAATTACTTTACTGTTTATCTTGTCGTCCTAAGGC 193
                     ***    *  * * *       ****      ****    *  **   * *   **    

consensus_198#0      CATCTCAGAGTTGATGTTCACTCTGGAACTCGAACCCAGTACCTTTCGCTTCANAAGCTA 477
consensus_198#1      AAATTTGTGTCAAACCTCTCCTCTATTGTTCA---------------------------- 225
                      *  *        *  *   ****     **                             

consensus_198#0      TC 479
consensus_198#1      --