cluster # 1981

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Schistosoma mansoni
cluster # 1981 cluster # 1981 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1981#0 length = 626 sequences # 1

consensus_1981#1 length = 346 sequences # 1

consensusID : consensus_1981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGACCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAAATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATGGGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATGCAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACTGNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT]

[+] EMBL CD080617             [GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGACCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAAATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATGGGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATGCAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACTGNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT]




>consensus_1981#0
GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATT
CTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAACTACTTATGGACCACT
ATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGG
TGCCATGCAACGTGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGTGATTG
GATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTC
GGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGACCTAAATATTTGGTAAT
TAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAAATTATGCGTCACGATCC
TCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATGGGTGCAAATGCAGCGTA
CATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATGCAATTAGCTATCAAAGA
GGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACTGNGTTTAATTTCGATGT
TTATATGCATCGTGGGGCTTGAGCAT

consensusID : consensus_1981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC]

[+] EMBL CD188539             [TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC]




>consensus_1981#1
TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAAT
TCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCA
CTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAA
GGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTC
CTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGT
GGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1981#0      -GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAAT 59
consensus_1981#1      TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAAT 60
                       ***********************************************************

consensus_1981#0      TCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAA-ACTACTTATGGACCA 118
consensus_1981#1      TCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCA 120
                      ******************************************** ***************

consensus_1981#0      CTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAA 178
consensus_1981#1      CTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAA 180
                      ************************************************************

consensus_1981#0      GGTGCCATGCAACGT---------------GGTCACTGGTATAAAACAAAAGAGATAGTC 223
consensus_1981#1      GGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTC 240
                      ***************               ******************************

consensus_1981#0      CTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGT 283
consensus_1981#1      CTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGT 300
                      *********** ************************************************

consensus_1981#0      GGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGA 343
consensus_1981#1      GGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC-------------- 346
                      **********************************************              

consensus_1981#0      CCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAA 403
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      ATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATG 463
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      GGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATG 523
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      CAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACT 583
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      GNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT 626
consensus_1981#1      -------------------------------------------