These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACACATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATGTATGTTTTCATCAATCTTTTTTGTTCGATTACTTTTTCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCATCTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTTTTTATACTTTTTTCTGTTATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTTAAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACAGTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATATGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCATGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT] [+] EMBL CD080781 [CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACACATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATGTATGTTTTCATCAATCTTTTTTGTTCGATTACTTTTTCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCATCTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTTTTTATACTTTTTTCTGTTATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTTAAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACAGTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATATGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCATGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT] consensusID : consensus_1987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTGTTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTTGTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTA] [+] EMBL CD189482 [TTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTGTTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTTGTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1987#0 CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACAC 60 consensus_1987#1 ------------------------------------------------------------ consensus_1987#0 ATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGT 120 consensus_1987#1 ------------------------------------TTTTTCTGTTGGTTTTACAAAGGT 24 ************************ consensus_1987#0 GGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTAT--TATTATCCATGTCTTCGAT 178 consensus_1987#1 GGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTG 84 ************************************* * *** *** * * * consensus_1987#0 TCGATCAGTAT-TAATTAGAATACATATGG-----TAGCAGTTT--CCAAGTGTTCCTGT 230 consensus_1987#1 TTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTT 144 * * * * * * ** * * * * * * *** **** * * * * consensus_1987#0 TTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATG-TATGTTTTCATCAATCTTTTTTG 289 consensus_1987#1 GTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTA 204 * ** * ** *** ****** * * *** *** ***** * ** * ** consensus_1987#0 TT-CGATTACTTTT-TCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCAT 347 consensus_1987#1 TTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAAT-ACATATGGT 263 ** **** * ** ** * * ** *** *** *** ** * * ** * consensus_1987#0 CTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTT-TTTATACTTTTTTCTGTT 406 consensus_1987#1 AGCAGTTTCCAAGTGTTCCTGTT--TGGTCACCTTTCATTTGTTTATGAGTGTTTA---- 317 * *** ** *** ** * **** *** ** ***** * *** consensus_1987#0 ATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTT 466 consensus_1987#1 ------------------------------------------------------------ consensus_1987#0 AAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACA 526 consensus_1987#1 ------------------------------------------------------------ consensus_1987#0 GTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATA 586 consensus_1987#1 ------------------------------------------------------------ consensus_1987#0 TGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCA 646 consensus_1987#1 ------------------------------------------------------------ consensus_1987#0 TGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT 702 consensus_1987#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||