These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTACACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATCCAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATGATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGCACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCACATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN] [+] EMBL CD081052 [CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTACACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATCCAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATGATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGCACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCACATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN] consensusID : consensus_2005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [AGAGCTTGTGCACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGATTCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCACTTGTTATAGATGATCCATCATGAAATGGATTCA] [+] EMBL AI976774 [AGAGCTTGTGCACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGATTCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCACTTGTTATAGATGATCCATCATGAAATGGATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2005#0 CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTAC 60 consensus_2005#1 ------------------------------------------------------------ consensus_2005#0 ACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATC 120 consensus_2005#1 ------------------------------------------------------------ consensus_2005#0 CAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATG 180 consensus_2005#1 ------------------------------------------------------------ consensus_2005#0 ATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGC 240 consensus_2005#1 -------------------------------------------------AGAGCTTGTGC 11 *********** consensus_2005#0 ACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAA 300 consensus_2005#1 ACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAA 71 **** ******************************************************* consensus_2005#0 GAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATG 360 consensus_2005#1 GAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATG 131 ******* ************************************** consensus_2005#0 CCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAA 420 consensus_2005#1 CCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAA 191 ************************************************************ consensus_2005#0 GATATGAACAGACGTGTTGTTATACCAGTAGGTTCA------------------------ 456 consensus_2005#1 GATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGAT 251 ************************************ consensus_2005#0 ----CATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTT 512 consensus_2005#1 TCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTT 311 ******************************************************** consensus_2005#0 GTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTG 572 consensus_2005#1 GTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTG 371 ** *********************** * * ************************* consensus_2005#0 AAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN----- 627 consensus_2005#1 AAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCA 431 ************************************************* consensus_2005#0 ---------------------------------- consensus_2005#1 CTTGTTATAGATGATCCATCATGAAATGGATTCA 465 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||