cluster # 2006

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Schistosoma mansoni
cluster # 2006 cluster # 2006 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2006#0 length = 349 sequences # 1

consensus_2006#1 length = 323 sequences # 1

consensusID : consensus_2006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [ATCATAACATGATCAGCGGCACTACTACGACTTCTACGTAATAATGAAACAAATCCTTTTGGACGATTATTTTTTGACTCTGAGTCAAAATCTTCATCTTCATCACCACCACGACTTCTGTCTCGACGAGAAGGAGATATCGTTTTATTGTTTGCTTCAATTTGAAAGTTATAATGAGGTTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGCAGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATGACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT]

[+] EMBL CD063498             [ATCATAACATGATCAGCGGCACTACTACGACTTCTACGTAATAATGAAACAAATCCTTTTGGACGATTATTTTTTGACTCTGAGTCAAAATCTTCATCTTCATCACCACCACGACTTCTGTCTCGACGAGAAGGAGATATCGTTTTATTGTTTGCTTCAATTTGAAAGTTATAATGAGGTTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGCAGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATGACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT]




>consensus_2006#0
ATCATAACATGATCAGCGGCACTACTACGACTTCTACGTAATAATGAAACAAATCCTTTT
GGACGATTATTTTTTGACTCTGAGTCAAAATCTTCATCTTCATCACCACCACGACTTCTG
TCTCGACGAGAAGGAGATATCGTTTTATTGTTTGCTTCAATTTGAAAGTTATAATGAGGT
TGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGCA
GTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATGA
CTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT

consensusID : consensus_2006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [ATACCATCCTCTTTACAACCAGTGTTGTTATTGTTATTATTAGTACTATTATTATTATTTGCTATGGTATATCGTGAAGTAGATGGTGATTCCATTGTTAACATACAAGGTGATATTAAAGATGTTTGCTTCAATTTGAAAGTTATAATGAGGTTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGCAGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATGACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT]

[+] EMBL CD063455             [ATACCATCCTCTTTACAACCAGTGTTGTTATTGTTATTATTAGTACTATTATTATTATTTGCTATGGTATATCGTGAAGTAGATGGTGATTCCATTGTTAACATACAAGGTGATATTAAAGATGTTTGCTTCAATTTGAAAGTTATAATGAGGTTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGCAGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATGACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT]




>consensus_2006#1
ATACCATCCTCTTTACAACCAGTGTTGTTATTGTTATTATTAGTACTATTATTATTATTT
GCTATGGTATATCGTGAAGTAGATGGTGATTCCATTGTTAACATACAAGGTGATATTAAA
GATGTTTGCTTCAATTTGAAAGTTATAATGAGGTTGAGTTAATCGTCTAACATTTAAACG
ATTATTAGAATTATCATAATTCTCTACACCAGCAGTTACTCGACCAAAAGCATTTGTTAC
ATCTTTTCCATCTTTACCATCAGATGTTGTATGACTAGCCAGGCTACAACCACTATCACT
TTGTGGTGAATCCAATCCTGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2006#0      ATCATAACATGATCAGCGGCACTACTACGACTTCTACGTAATAATGAAACAAATCCTTTT 60
consensus_2006#1      ---------------------ATACCATCCTCTTTACA-ACCAGTGTTGTTA-TTGTTAT 37
                                            *** *     * ***  *  * **     * *  ** *

consensus_2006#0      GGACGATTATTTTTTGACTCTGAGTCAAAATCTTCATCTTCATCACCACCACGACTTCTG 120
consensus_2006#1      TATTAGTACTATTATTATTATTTGCTATGGTAT--ATCGTGAAGTAGATGGTGATTCCAT 95
                            *  * ** * * * *  *  *   * *  *** * *     *    ** * *  

consensus_2006#0      TCTCGACG-AGAAGGAGATATCGTTTTATTGTTTGCTTCAATTTGAAAGTTATAATGAGG 179
consensus_2006#1      TGTTAACATACAAGGTGATATTAAA--GATGTTTGCTTCAATTTGAAAGTTATAATGAGG 153
                      * *  **  * **** *****        *******************************

consensus_2006#0      TTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGC 239
consensus_2006#1      TTGAGTTAATCGTCTAACATTTAAACGATTATTAGAATTATCATAATTCTCTACACCAGC 213
                      ************************************************************

consensus_2006#0      AGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATG 299
consensus_2006#1      AGTTACTCGACCAAAAGCATTTGTTACATCTTTTCCATCTTTACCATCAGATGTTGTATG 273
                      ************************************************************

consensus_2006#0      ACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT 349
consensus_2006#1      ACTAGCCAGGCTACAACCACTATCACTTTGTGGTGAATCCAATCCTGATT 323
                      **************************************************