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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNNNNNNNNNNNCAAAATCCGATTCCTCCAGTCAATGAAATTTATATTGATGAAGACTATATTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATAAAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCAACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTACACCGAGGGAGCAATTTCATCGAATGATGGCTGGTTGTGGAATGGAATTATACAGTNNNNNNNNNNNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCTCACCATATTTACGAACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATTCAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG]
[+] EMBL CD081054 [TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNNNNNNNNNNNCAAAATCCGATTCCTCCAGTCAATGAAATTTATATTGATGAAGACTATATTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATAAAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCAACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTACACCGAGGGAGCAATTTCATCGAATGATGGCTGGTTGTGGAATGGAATTATACAGTNNNNNNNNNNNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCTCACCATATTTACGAACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATTCAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG]
consensusID : consensus_2007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAACAAATATCCTGTTATCTAGTGATATTTCAGATCATATTGAACTTAATTTTAACAACAGTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACCACAAAAAATTCAGTGAATATTTCATTCAATAATTCCTTGGAGTTAGATTTCAACCCAACAATAAGTAAACTGAGTTATTTAATGCAATATGAATATGAATTTACCGATAATGATAATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA]
[-] EMBL CD093837 [ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAACAAATATCCTGTTATCTAGTGATATTTCAGATCATATTGAACTTAATTTTAACAACAGTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACCACAAAAAATTCAGTGAATATTTCATTCAATAATTCCTTGGAGTTAGATTTCAACCCAACAATAAGTAAACTGAGTTATTTAATGCAATATGAATATGAATTTACCGATAATGATAATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2007#0 TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTAT 60
consensus_2007#1 ------------------------------------------------------------
consensus_2007#0 AGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATC 120
consensus_2007#1 ------------------------------------------------------------
consensus_2007#0 GAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNN 180
consensus_2007#1 --------ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAAC 52
** * ** * ** * * * * * ** * **
consensus_2007#0 NNNNNNNNNCAAAATCCGAT--TCCTCCAGTCAATGAAATTTATATTGATGAAGACTATA 238
consensus_2007#1 AAATATCCT-GTTATCTAGTGATATTTCAG---ATCATATTGAACTTAATTTTAACAACA 108
*** * * * *** ** * *** * ** ** ** * *
consensus_2007#0 TTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATA 298
consensus_2007#1 GTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACC-ACA 167
* * * * ** * ** * **** ** * * **** * * *
consensus_2007#0 AAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCA 358
consensus_2007#1 AAAAATTCAGTGAATATTTCAT---TCAATAATTCCTTGGAGTTAGATTTCAACC---CA 221
**** *** * *** * * * ** * * ****** **
consensus_2007#0 ACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTAC--ACCGAGGG 416
consensus_2007#1 ACAATAAGTAAACTGAG--TTATTTAATG-CAATATGAATATGAATTTACCGATAATGAT 278
*** ** * * ** ****** ** ***** ****** * *
consensus_2007#0 AGCAAT-TTCATCGAATGATGGCTGGTTGTG-GAATGGAATTAT--ACAGTNNNNNNNNN 472
consensus_2007#1 AATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAA 338
* *** ** ** * ** ***** ** ** * *** * * *
consensus_2007#0 NNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCT-CACCA--TAT 529
consensus_2007#1 CCGATGAGATCAATTGCAATTGATA-ACTCTTTAGAACAGCCAGAACGTACATCGAGTAT 397
** ** ** * * ** * ** ** * ** * * * ** * ***
consensus_2007#0 TTACGA-ACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATT 588
consensus_2007#1 TTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA---- 453
*** * *** * ** * **** * * ** * ** *** *
consensus_2007#0 CAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG 633
consensus_2007#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||