cluster # 2011

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Schistosoma mansoni
cluster # 2011 cluster # 2011 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2011#0 length = 336 sequences # 1

consensus_2011#1 length = 205 sequences # 1

consensusID : consensus_2011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [AATTCATTAACATTAATATTAATGGACATTTTTTTAGATTGCAAATAGATACCGCATCAGACGTCACCATCCTCTCTCACAAAAATTGGATCAAAATGGGTAGCCCAAGCCTGCAGCGAACAACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAATGTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGGTATGTCATATAACTCCAGCTGATCTAAATTTACTTGGTTTAGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATACCATATGCCACATGATATCACAACCTCATGGCACTG]

[+] EMBL SM1247304            [AATTCATTAACATTAATATTAATGGACATTTTTTTAGATTGCAAATAGATACCGCATCAGACGTCACCATCCTCTCTCACAAAAATTGGATCAAAATGGGTAGCCCAAGCCTGCAGCGAACAACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAATGTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGGTATGTCATATAACTCCAGCTGATCTAAATTTACTTGGTTTAGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATACCATATGCCACATGATATCACAACCTCATGGCACTG]




>consensus_2011#0
AATTCATTAACATTAATATTAATGGACATTTTTTTAGATTGCAAATAGATACCGCATCAG
ACGTCACCATCCTCTCTCACAAAAATTGGATCAAAATGGGTAGCCCAAGCCTGCAGCGAA
CAACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAAT
GTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGGTATGTCATATAACTCCAGCTGATC
TAAATTTACTTGGTTTAGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATA
CCATATGCCACATGATATCACAACCTCATGGCACTG

consensusID : consensus_2011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [ACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAATGTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATACCATATGCCACATGATATCACAACCTCATGGCACTGAATCGTATACCAGGAAGCTAATGGCGCAGTTTTC]

[+] EMBL CD165312             [ACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAATGTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATACCATATGCCACATGATATCACAACCTCATGGCACTGAATCGTATACCAGGAAGCTAATGGCGCAGTTTTC]




>consensus_2011#1
ACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAATGT
AGAGTGACCTTCCGGGAGTCGTCATTTACCGGGATTGGTTCGATCAACTGAAATTGGCTG
ATGTCCCACTAAATACCATATGCCACATGATATCACAACCTCATGGCACTGAATCGTATA
CCAGGAAGCTAATGGCGCAGTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2011#0      AATTCATTAACATTAATATTAATGGACATTTTTTTAGATTGCAAATAGATACCGCATCAG 60
consensus_2011#1      ------------------------------------------------------------
                                                                                  

consensus_2011#0      ACGTCACCATCCTCTCTCACAAAAATTGGATCAAAATGGGTAGCCCAAGCCTGCAGCGAA 120
consensus_2011#1      ------------------------------------------------------------
                                                                                  

consensus_2011#0      CAACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAAT 180
consensus_2011#1      --ACTAAAAAGCCTCGTACCGCATGTGGTAATTTCCTACACTTAGAAGGACAATTGGAAT 58
                        **********************************************************

consensus_2011#0      GTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGGGTATGTCATATAACTCCAGCTGATC 240
consensus_2011#1      GTAGAGTGACCTTCCGGGAGTCGTCATTTACCGGG------------------------- 93
                      ***********************************                         

consensus_2011#0      TAAATTTACTTGGTTTAGATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATA 300
consensus_2011#1      ------------------ATTGGTTCGATCAACTGAAATTGGCTGATGTCCCACTAAATA 135
                                        ******************************************

consensus_2011#0      CCATATGCCACATGATATCACAACCTCATGGCACTG------------------------ 336
consensus_2011#1      CCATATGCCACATGATATCACAACCTCATGGCACTGAATCGTATACCAGGAAGCTAATGG 195
                      ************************************                        

consensus_2011#0      ----------
consensus_2011#1      CGCAGTTTTC 205