cluster # 2020

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Schistosoma mansoni
cluster # 2020 cluster # 2020 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2020#0 length = 690 sequences # 1

consensus_2020#1 length = 434 sequences # 1

consensusID : consensus_2020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [GCCAGATTAGATTTACTCGAAATATTGGACAATAAATTATCATTGATATGTGGCTAGTGGACTTAAATATGATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCTGGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACCGGTTAACCGCTAAACAGAGAATATTTCTATTCAAACTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCACTGTACGATTATCATTACATTAGATTATGAATTTTCTTAAAATCAACATTTATGTAATTATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCAACTAGATCTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTACAATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGCATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACAAGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGCATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT]

[+] EMBL CD081322             [GCCAGATTAGATTTACTCGAAATATTGGACAATAAATTATCATTGATATGTGGCTAGTGGACTTAAATATGATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCTGGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACCGGTTAACCGCTAAACAGAGAATATTTCTATTCAAACTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCACTGTACGATTATCATTACATTAGATTATGAATTTTCTTAAAATCAACATTTATGTAATTATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCAACTAGATCTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTACAATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGCATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACAAGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGCATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT]




>consensus_2020#0
GCCAGATTAGATTTACTCGAAATATTGGACAATAAATTATCATTGATATGTGGCTAGTGG
ACTTAAATATGATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCTGGCATAACATGA
TCCAGTCTAGTGATCGGATAATTTAGATCACCGGTTAACCGCTAAACAGAGAATATTTCT
ATTCAAACTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCACTGTACGATTATCATTA
CATTAGATTATGAATTTTCTTAAAATCAACATTTATGTAATTATTGTCTTTGTATTCTAT
TATGAATATTTATATATTTATTTCAATCAAAAATCAAACCAACTAGATCTTTTTTACTTT
CCATTCAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAGGTTTAG
CTGGTGGTTTAGTTAGTCGACGAATGAGTAGTACAATACCTGTAGCTAGAAATAGATCAT
TATCAATGGAAGAATATGATCAACCAAAAGGTGCATCAAATTGTATATTTCATAAAAATC
GTAAATATAGTACAACTACTGGTAGATTAATACAAGATGATAGTCCAATTAATGAACAAG
AAGATCANACTGAAGCTTAATTATTATACTCAGCATTATATAAATATATATCGATATATA
TATATATATACCTACCTATATAANTAGTTT

consensusID : consensus_2020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAATGCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTATAAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTATGTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCCGTTCTATTTCTAACCGGTGCATTAGCATCACATAATCATACTGTGTTTCGTCTATACAATGCTGTTCTATCCGCTGTACGCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCAACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAG]

[+] EMBL CD184666             [TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAATGCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTATAAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTATGTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCCGTTCTATTTCTAACCGGTGCATTAGCATCACATAATCATACTGTGTTTCGTCTATACAATGCTGTTCTATCCGCTGTACGCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCAACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAG]




>consensus_2020#1
TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAAT
GCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTAT
AAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTAT
GTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCCGTTCT
ATTTCTAACCGGTGCATTAGCATCACATAATCATACTGTGTTTCGTCTATACAATGCTGT
TCTATCCGCTGTACGCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCAACTAGA
CAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTT
TATCCAAGGATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2020#0      -------GCCAGATTAGATTTACTCGAAAT--ATTGGACAATAAATTATCATTGAT--AT 49
consensus_2020#1      TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAAT 60
                                * **** **  * * * ***  **    *     * *   *** **  **

consensus_2020#0      GTGGCTAGTGGACTTAAATAT-GATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCT 108
consensus_2020#1      GCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTAT 120
                      *   *   * *  *    *   ****       * *  *      * **  *     * *

consensus_2020#0      GGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACC-GGTTAACCGCTAAAC 167
consensus_2020#1      AAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTAT 180
                         **  * * *  ** *        **  ***   *    *       **   *   * 

consensus_2020#0      AGAGAATATTTC-TATTCAAA---CTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCA 223
consensus_2020#1      GTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCC--GTT 238
                            *** **   * ****   ****  *   ** * ****    * *   **  *  

consensus_2020#0      CTGTACGATTATCATTACATTAG-ATTATG-AATTTTCTTAAAATCAACATTTATGTAAT 281
consensus_2020#1      CTATTTC-TAACCGGTGCATTAGCATCACATAATCATACTGTGTTT--CGTCTATACAAT 295
                      ** *    * * *  * ****** ** *   ***  *  *    *   * * ***  ***

consensus_2020#0      TATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCA 341
consensus_2020#1      GCTGTTCTATCCGCTGTAC-GCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCA 354
                        *  *** *    * **     *  **    ** ** *    **     * *  *  **

consensus_2020#0      ACTAGAT-------CTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACA 394
consensus_2020#1      ACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACA 414
                      ******        *   * ** *       *****************************

consensus_2020#0      ATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTAC 454
consensus_2020#1      ATTTTTTATCCAAGGATTAG---------------------------------------- 434
                      ********************                                        

consensus_2020#0      AATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGC 514
consensus_2020#1      ------------------------------------------------------------
                                                                                  

consensus_2020#0      ATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACA 574
consensus_2020#1      ------------------------------------------------------------
                                                                                  

consensus_2020#0      AGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGC 634
consensus_2020#1      ------------------------------------------------------------
                                                                                  

consensus_2020#0      ATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT 690
consensus_2020#1      --------------------------------------------------------