cluster # 2028

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Schistosoma mansoni
cluster # 2028 cluster # 2028 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2028#0 length = 670 sequences # 1

consensus_2028#1 length = 187 sequences # 1

consensusID : consensus_2028#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [NAATCGNGCCGAGGCCAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCGGTGGCAAAATAATGTTCCAAGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAAGTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGGGTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAATATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTTTAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAGTCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAACGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAAAACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTTTGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCACTGGAA]

[+] EMBL CD081466             [NAATCGNGCCGAGGCCAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCGGTGGCAAAATAATGTTCCAAGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAAGTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGGGTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAATATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTTTAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAGTCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAACGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAAAACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTTTGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCACTGGAA]




>consensus_2028#0
NAATCGNGCCGAGGCCAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACC
TTTCGGTGGCAAAATAATGTTCCAAGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCA
TATGTAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGA
AAAAGTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGAT
TAGGGTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAA
CAAATATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTA
TTTTTAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTC
ACAGTCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGG
CAAACGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGAT
ACAAAACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACA
CTTTTGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACA
CCCACTGGAA

consensusID : consensus_2028#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGGTCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCGGTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATAT]

[+] EMBL SM871                [CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGGTCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCGGTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATAT]




>consensus_2028#1
CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGG
TCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCG
GTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATG
TAAATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2028#0      ----------------------------------------------------NAATCGNG 8
consensus_2028#1      CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGG 60
                                                                            *    *

consensus_2028#0      CCGAGGCC---AATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCG 65
consensus_2028#1      TCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCG 120
                       *    *    ************************************* ***********

consensus_2028#0      GTGGCAAAATAATGTTCCAAG-AAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATG 124
consensus_2028#1      GTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATG 180
                      ********************* **************************************

consensus_2028#0      TAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAA 184
consensus_2028#1      TAAATAT----------------------------------------------------- 187
                      *******                                                     

consensus_2028#0      GTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGG 244
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      GTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAA 304
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      TATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTT 364
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      TAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAG 424
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      TCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAA 484
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      CGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAA 544
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      AACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTT 604
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      TGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCA 664
consensus_2028#1      ------------------------------------------------------------
                                                                                  

consensus_2028#0      CTGGAA 670
consensus_2028#1      ------