cluster # 203

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Schistosoma mansoni
cluster # 203 cluster # 203 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_203#0 length = 432 sequences # 1

consensus_203#1 length = 216 sequences # 1

consensusID : consensus_203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GGGGCTGACACAGCATCATTAGACAGACCAGTTTGTATACGTTTCACCAAGTCATGATGCCCTTTCTTAGCTAAAGACTCAGAAAAGAATATTCATAAGAACTTTCTCGAACTTCCCGATGGCGTAAATTAACGTAGAGATAACTATTTGGTATGTGTTGGAGATGAATTCACAAATAATAACGTGAAAACAGTGTTCTGAACACTCTAATTGATAAATCTTAAAAAATCTTAAGATGTCGACAGATGATATACCTAATATCTGTATATGAATTGTCATAGACACTTATGCACACATTCATAACTAAATAGTCGATGTAATAGTCATCAATGTAAAGAATTCTGACAAGATTAGAGAGGCTCATATTAACTCGTAGATAAGTAGTAGTGCATATAAGTGATATTGTAATCATTGCAGGCAACTATGAGTTCC]

[+] EMBL CD086564             [GGGGCTGACACAGCATCATTAGACAGACCAGTTTGTATACGTTTCACCAAGTCATGATGCCCTTTCTTAGCTAAAGACTCAGAAAAGAATATTCATAAGAACTTTCTCGAACTTCCCGATGGCGTAAATTAACGTAGAGATAACTATTTGGTATGTGTTGGAGATGAATTCACAAATAATAACGTGAAAACAGTGTTCTGAACACTCTAATTGATAAATCTTAAAAAATCTTAAGATGTCGACAGATGATATACCTAATATCTGTATATGAATTGTCATAGACACTTATGCACACATTCATAACTAAATAGTCGATGTAATAGTCATCAATGTAAAGAATTCTGACAAGATTAGAGAGGCTCATATTAACTCGTAGATAAGTAGTAGTGCATATAAGTGATATTGTAATCATTGCAGGCAACTATGAGTTCC]




>consensus_203#0
GGGGCTGACACAGCATCATTAGACAGACCAGTTTGTATACGTTTCACCAAGTCATGATGC
CCTTTCTTAGCTAAAGACTCAGAAAAGAATATTCATAAGAACTTTCTCGAACTTCCCGAT
GGCGTAAATTAACGTAGAGATAACTATTTGGTATGTGTTGGAGATGAATTCACAAATAAT
AACGTGAAAACAGTGTTCTGAACACTCTAATTGATAAATCTTAAAAAATCTTAAGATGTC
GACAGATGATATACCTAATATCTGTATATGAATTGTCATAGACACTTATGCACACATTCA
TAACTAAATAGTCGATGTAATAGTCATCAATGTAAAGAATTCTGACAAGATTAGAGAGGC
TCATATTAACTCGTAGATAAGTAGTAGTGCATATAAGTGATATTGTAATCATTGCAGGCA
ACTATGAGTTCC

consensusID : consensus_203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [ACTCATTCATAACTAAATAGTCGATGTAATAGTCTTCAATGTAAAGAATTCGGCAAGATTAGAGAGGCTCATAATAACTCGTAGATAAATAGTAGTGCACATAAGTGATATTGTGATCATTGTAGTCAACTTATGAGTTCCCGTGTGAATGCTAAATTTGATAGAGTGATCTGTCGAAACATTTTATCAATACCTAGTTAAACACTTCCATATTTC]

[-] EMBL CD081560             [ACTCATTCATAACTAAATAGTCGATGTAATAGTCTTCAATGTAAAGAATTCGGCAAGATTAGAGAGGCTCATAATAACTCGTAGATAAATAGTAGTGCACATAAGTGATATTGTGATCATTGTAGTCAACTTATGAGTTCCCGTGTGAATGCTAAATTTGATAGAGTGATCTGTCGAAACATTTTATCAATACCTAGTTAAACACTTCCATATTTC]




>consensus_203#1
ACTCATTCATAACTAAATAGTCGATGTAATAGTCTTCAATGTAAAGAATTCGGCAAGATT
AGAGAGGCTCATAATAACTCGTAGATAAATAGTAGTGCACATAAGTGATATTGTGATCAT
TGTAGTCAACTTATGAGTTCCCGTGTGAATGCTAAATTTGATAGAGTGATCTGTCGAAAC
ATTTTATCAATACCTAGTTAAACACTTCCATATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_203#0      GGGGCTGACACAGCATCATTAGACAGACCAGTTTGTATACGTTTCACCAAGTCATGATGC 60
consensus_203#1      ------------------------------------------------------------
                                                                                 

consensus_203#0      CCTTTCTTAGCTAAAGACTCAGAAAAGAATATTCATAAGAACTTTCTCGAACTTCCCGAT 120
consensus_203#1      ------------------------------------------------------------
                                                                                 

consensus_203#0      GGCGTAAATTAACGTAGAGATAACTATTTGGTATGTGTTGGAGATGAATTCACAAATAAT 180
consensus_203#1      ------------------------------------------------------------
                                                                                 

consensus_203#0      AACGTGAAAACAGTGTTCTGAACACTCTAATTGATAAATCTTAAAAAATCTTAAGATGTC 240
consensus_203#1      ------------------------------------------------------------
                                                                                 

consensus_203#0      GACAGATGATATACCTAATATCTGTATATGAATTGTCATAGACACTTATGCACACATTCA 300
consensus_203#1      ---------------------------------------------------ACTCATTCA 9
                                                                        ** ******

consensus_203#0      TAACTAAATAGTCGATGTAATAGTCATCAATGTAAAGAATTCTGACAAGATTAGAGAGGC 360
consensus_203#1      TAACTAAATAGTCGATGTAATAGTCTTCAATGTAAAGAATTC-GGCAAGATTAGAGAGGC 68
                     ************************* **************** * ***************

consensus_203#0      TCATATTAACTCGTAGATAAGTAGTAGTGCATATAAGTGATATTGTAATCATTGCAGGCA 420
consensus_203#1      TCATAATAACTCGTAGATAAATAGTAGTGCACATAAGTGATATTGTGATCATTGTAGTCA 128
                     ***** ************** ********** ************** ******* ** **

consensus_203#0      ACT-ATGAGTTCC----------------------------------------------- 432
consensus_203#1      ACTTATGAGTTCCCGTGTGAATGCTAAATTTGATAGAGTGATCTGTCGAAACATTTTATC 188
                     *** *********                                               

consensus_203#0      ----------------------------
consensus_203#1      AATACCTAGTTAAACACTTCCATATTTC 216