cluster # 207

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Schistosoma mansoni
cluster # 207 cluster # 207 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_207#0 length = 366 sequences # 1

consensus_207#1 length = 290 sequences # 1

consensusID : consensus_207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTAAAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGTTAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATGCGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAAAAACTGTGTGTAAGAAAATAACTCAACTTCATGTCAGGCAACGAAGACGCGGATACGAAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTCCTTGAATTG]

[+] EMBL CD159949             [TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTAAAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGTTAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATGCGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAAAAACTGTGTGTAAGAAAATAACTCAACTTCATGTCAGGCAACGAAGACGCGGATACGAAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTCCTTGAATTG]




>consensus_207#0
TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTA
AAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGT
TAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATG
CGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAA
AAACTGTGTGTAAGAAAATAACTCAACTTCATGTCAGGCAACGAAGACGCGGATACGAAA
ACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTCCTT
GAATTG

consensusID : consensus_207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TATTTGAGTGCAGTGGACCGAATCTTCCAAGTAATTAGATGTTCTTGATGTGTCCCTCAATTGATATTGCAATTGGTTTATGTAAATTATCAGTGATGGAGACTTTCTTACAAATCAGAATGTGAATATTCATCCTACAGATAATGCCTGAAAATTCTGCTATTATTCGAACAATCATTTGGTTTATTATTGGTATTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGAATGTTCGTGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT]

[+] EMBL CD118641             [TATTTGAGTGCAGTGGACCGAATCTTCCAAGTAATTAGATGTTCTTGATGTGTCCCTCAATTGATATTGCAATTGGTTTATGTAAATTATCAGTGATGGAGACTTTCTTACAAATCAGAATGTGAATATTCATCCTACAGATAATGCCTGAAAATTCTGCTATTATTCGAACAATCATTTGGTTTATTATTGGTATTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGAATGTTCGTGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT]




>consensus_207#1
TATTTGAGTGCAGTGGACCGAATCTTCCAAGTAATTAGATGTTCTTGATGTGTCCCTCAA
TTGATATTGCAATTGGTTTATGTAAATTATCAGTGATGGAGACTTTCTTACAAATCAGAA
TGTGAATATTCATCCTACAGATAATGCCTGAAAATTCTGCTATTATTCGAACAATCATTT
GGTTTATTATTGGTATTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAG
GAATGTTCGTGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_207#0      TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTA 60
consensus_207#1      ------------------------------TATTTGAG-TGCAGTGGACCGAATCTTCCA 29
                                                   ***  **  * *    *     ***  * *

consensus_207#0      AAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGT 120
consensus_207#1      AGTAATT-AGATGTTCTTGATGT--GTCCCTCAATTGATATTGCAATT---GGTTTATGT 83
                     *   *** *    **   *** *   * * * ** **   *  ** **     *  ****

consensus_207#0      TAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATG 180
consensus_207#1      AAA--TTATCAGTGATGGAGACTT-TCTTACAAATCAGAATG-TGAATATTCATCCTACA 139
                      **  ** * * *  * * ** ** *   * **   * **** *   **   **  **  

consensus_207#0      CGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAA 240
consensus_207#1      GATAATGCCTGAAAATTCTGCTATTA--TTCGAACA----ATCATTTGGTTTATTATTGG 193
                        *** *   ** * * *      *  **** ***     *** * * ******     

consensus_207#0      AAACTGTGTGTAAGAAAATAACT--CAAC-TTCATGTCAGGCAACGAAGACGCGGATACG 297
consensus_207#1      TA-TTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGA---ATGTTCG 249
                      *  * *    ** **  ** **  **   *** * * *     * * **      * **

consensus_207#0      AAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTC 357
consensus_207#1      TGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT------------------- 290
                       **      * ****    *** * * *** *  **** *                   

consensus_207#0      CTTGAATTG 366
consensus_207#1      ---------