These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACCACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGTATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTAATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACTGGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGACGGAAATCTAATTCACTTATTCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATTTGTTACTACATACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAGTTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCCCCCCAAAAACATCAAGCGTATTTT] [+] EMBL CD082059 [GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACCACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGTATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTAATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACTGGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGACGGAAATCTAATTCACTTATTCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATTTGTTACTACATACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAGTTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCCCCCCAAAAACATCAAGCGTATTTT] consensusID : consensus_2078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [TATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGGGAGTATATCAAACACAAGATTAGGTAATGATGAACTTCGTCTACGCAGTGAATCACTATCGGCTTTCATTTCTGTTGGGACAATATAATCCATTAATGGTCCAAATAAAGTGAGGTATACAAAATTATCATAACGTAAAATTTTACTGACATCCATCGTGTCTAAATTAACTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATATGGTTCTTCTAATGCATATGGAATTATAGATCCAGGAATTAAAAAAGATGGACAAGCTCCACCATCCCATTTATCAGGA] [+] EMBL CD093185 [TATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGGGAGTATATCAAACACAAGATTAGGTAATGATGAACTTCGTCTACGCAGTGAATCACTATCGGCTTTCATTTCTGTTGGGACAATATAATCCATTAATGGTCCAAATAAAGTGAGGTATACAAAATTATCATAACGTAAAATTTTACTGACATCCATCGTGTCTAAATTAACTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATATGGTTCTTCTAATGCATATGGAATTATAGATCCAGGAATTAAAAAAGATGGACAAGCTCCACCATCCCATTTATCAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2078#0 GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACC 60 consensus_2078#1 ------------------------------------------------------------ consensus_2078#0 ACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAA 120 consensus_2078#1 ------------------------------TATTCACATTCACATCCACATGCACTGGAA 30 ****************************** consensus_2078#0 CAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAA 180 consensus_2078#1 CAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAA 90 *************************************** ******************** consensus_2078#0 CTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAG 240 consensus_2078#1 CTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAG 150 ************************************************************ consensus_2078#0 TTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGT 300 consensus_2078#1 TTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGG 210 *********************************************************** consensus_2078#0 ATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTA 360 consensus_2078#1 GAGTATATCAAACACAAGAT--------TAGGTAATGATGAACTTCGTCTACGCAGTGAA 262 * * * * * * * * ** ** ** ** ** ** ** * consensus_2078#0 ATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACT 420 consensus_2078#1 TCACTATCGGCTTTCATTTCTGTTGGGA-CAATATAATCCATTAATGGTCCAAATAAAGT 321 * ** ** * * * ****** ** *** *** ** * consensus_2078#0 GGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGA 480 consensus_2078#1 GAG-GTATAC-AAAATTATCATAA---CGTAAAATTTTACTGACAT--CCATCGTGTCTA 374 * * ** *** * ** *** * * **** * * * *** * consensus_2078#0 CGGAAATCTAATTCACTTAT-TCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATT 539 consensus_2078#1 AATTAA-CTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATAT 433 ** *** ****** ** ** * ** * *** * * ** * * * consensus_2078#0 TGTTACTACA-TACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAG 598 consensus_2078#1 GGTTCTTCTAATGCATATGGAATTATAGATCCAG-GAATTAAAAA----AGATGGACAAG 488 *** * * * ***** ** ** ** * * ***** * * * * ** consensus_2078#0 TTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCC 658 consensus_2078#1 CTCC------ACCATCCCATTTATCAGGA------------------------------- 511 * * * * * **** ** * consensus_2078#0 CCCCAAAAACATCAAGCGTATTTT 682 consensus_2078#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||