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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2078 cluster # 2078       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2078#0 length = 682 sequences # 1  
consensus_2078#1 length = 511 sequences # 1  

consensusID : consensus_2078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACCACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGTATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTAATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACTGGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGACGGAAATCTAATTCACTTATTCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATTTGTTACTACATACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAGTTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCCCCCCAAAAACATCAAGCGTATTTT]

[+] EMBL CD082059             [GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACCACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGTATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTAATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACTGGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGACGGAAATCTAATTCACTTATTCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATTTGTTACTACATACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAGTTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCCCCCCAAAAACATCAAGCGTATTTT]


>consensus_2078#0 GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACC ACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAA CAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAA CTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAG TTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGT ATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTA ATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACT GGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGA CGGAAATCTAATTCACTTATTCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATTT GTTACTACATACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAGTT NTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCCCC CCAAAAACATCAAGCGTATTTT



consensusID : consensus_2078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [TATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGGGAGTATATCAAACACAAGATTAGGTAATGATGAACTTCGTCTACGCAGTGAATCACTATCGGCTTTCATTTCTGTTGGGACAATATAATCCATTAATGGTCCAAATAAAGTGAGGTATACAAAATTATCATAACGTAAAATTTTACTGACATCCATCGTGTCTAAATTAACTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATATGGTTCTTCTAATGCATATGGAATTATAGATCCAGGAATTAAAAAAGATGGACAAGCTCCACCATCCCATTTATCAGGA]

[+] EMBL CD093185             [TATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGGGAGTATATCAAACACAAGATTAGGTAATGATGAACTTCGTCTACGCAGTGAATCACTATCGGCTTTCATTTCTGTTGGGACAATATAATCCATTAATGGTCCAAATAAAGTGAGGTATACAAAATTATCATAACGTAAAATTTTACTGACATCCATCGTGTCTAAATTAACTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATATGGTTCTTCTAATGCATATGGAATTATAGATCCAGGAATTAAAAAAGATGGACAAGCTCCACCATCCCATTTATCAGGA]


>consensus_2078#1 TATTCACATTCACATCCACATGCACTGGAACAAACAACTGAAGATAATCAGTTACCTATT GGACATTGTGATTGTCATTGTTCGCAATAACTATAGTTTTAATTTGTAATCACTTACGTG TATCCCTTTTCACTTATGAATTGATGAGAGTTTCCATATTGATGATTATTTCAGAAAAAA ATCACATCAATCATCGTATTTAGATCCAGGGAGTATATCAAACACAAGATTAGGTAATGA TGAACTTCGTCTACGCAGTGAATCACTATCGGCTTTCATTTCTGTTGGGACAATATAATC CATTAATGGTCCAAATAAAGTGAGGTATACAAAATTATCATAACGTAAAATTTTACTGAC ATCCATCGTGTCTAAATTAACTATTTCACTGATATCATCCTGTACACCAAAAATAATAGA TGAACTACCATATGGTTCTTCTAATGCATATGGAATTATAGATCCAGGAATTAAAAAAGA TGGACAAGCTCCACCATCCCATTTATCAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2078#0      GGCTCGAGGGACATTGGGGATTTTTCACCAGTAGACAGTAATATTAATACTACTAATACC 60
consensus_2078#1      ------------------------------------------------------------
                                                                                  

consensus_2078#0      ACTTCTAACGGACCTATCTATTCAAGATACTATTCACATTCACATCCACATGCACTGGAA 120
consensus_2078#1      ------------------------------TATTCACATTCACATCCACATGCACTGGAA 30
                                                    ******************************

consensus_2078#0      CAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTAATTGTCATTGTTCGCAATAA 180
consensus_2078#1      CAAACAACTGAAGATAATCAGTTACCTATTGGACATTGTGATTGTCATTGTTCGCAATAA 90
                      *************************************** ********************

consensus_2078#0      CTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAG 240
consensus_2078#1      CTATAGTTTTAATTTGTAATCACTTACGTGTATCCCTTTTCACTTATGAATTGATGAGAG 150
                      ************************************************************

consensus_2078#0      TTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGT 300
consensus_2078#1      TTTCCATATTGATGATTATTTCAGAAAAAAATCACATCAATCATCGTATTTAGATCCAGG 210
                      *********************************************************** 

consensus_2078#0      ATTTTTCTTCATTCTATGTTCCCTTATCTTAGTGATTATACTTTTTGTTTAATGGGTTTA 360
consensus_2078#1      GAGTATATCAAACACAAGAT--------TAGGTAATGATGAACTTCGTCTACGCAGTGAA 262
                         * * *  *    * * *        *  ** ** **    ** ** **    **  *

consensus_2078#0      ATGAAACTTCTTTCTATGAGTACTACTATCAATATGATTATTTACCATAATTAATCAACT 420
consensus_2078#1      TCACTATCGGCTTTCATTTCTGTTGGGA-CAATATAATCCATTAATGGTCCAAATAAAGT 321
                           *     **  **   *  *   * ****** **   ***        *** ** *

consensus_2078#0      GGGTGTTTACTGATGGTAGTATATATTCTCACCTGTTTATTATTGTTATTACTCTGTTGA 480
consensus_2078#1      GAG-GTATAC-AAAATTATCATAA---CGTAAAATTTTACTGACAT--CCATCGTGTCTA 374
                      * * ** ***  *   **  ***    *  *    **** *    *    *   ***  *

consensus_2078#0      CGGAAATCTAATTCACTTAT-TCGACTTGCTCTTTAAATACATCTTCTGTTTGAATAATT 539
consensus_2078#1      AATTAA-CTATTTCACTGATATCATCCTGTACACCAAAAATAATAGATGAACTACCATAT 433
                          ** *** ****** ** **  * **  *   *** * *     **    *  *  *

consensus_2078#0      TGTTACTACA-TACATATTTTTTTCTACTTCTAATGTATTAACGACCTCATCTCAATTAG 598
consensus_2078#1      GGTTCTTCTAATGCATATGGAATTATAGATCCAG-GAATTAAAAA----AGATGGACAAG 488
                       ***  *  * * *****    ** **  ** *  * *****  *    *  *  *  **

consensus_2078#0      TTNTGATTGTATCGTTCTATTTCTCTGTGTCGTGGTAGTGAATGTTTTGCACTGTTTTCC 658
consensus_2078#1      CTCC------ACCATCCCATTTATCAGGA------------------------------- 511
                       *        * * * * **** ** *                                 

consensus_2078#0      CCCCAAAAACATCAAGCGTATTTT 682
consensus_2078#1      ------------------------
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)