These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA] [+] EMBL CD132796 [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA] consensusID : consensus_2093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT] [+] EMBL CD198297 [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2093#0 CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAA 60 consensus_2093#1 ------------------------------------------------------------ consensus_2093#0 ATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAA 120 consensus_2093#1 ------------------------------------------------------------ consensus_2093#0 GTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAA 180 consensus_2093#1 ------------------------------------------------------------ consensus_2093#0 AAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACG 240 consensus_2093#1 ---------------------------TACTAGTCCCACGAACCATCACTATTATTGACG 33 ***** ****** ****** ************* consensus_2093#0 TTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGA 300 consensus_2093#1 GTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGC 93 **** *** ***** ****** *** ** **** * ********* * *** **** consensus_2093#0 AAATGACAAAACCAAGAGAA--ACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAA 358 consensus_2093#1 TGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAA 153 *** ** *** ** * *** * ** ******* ********************* consensus_2093#0 TAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 418 consensus_2093#1 TACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 213 ** ********************************************************* consensus_2093#0 TATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGA 478 consensus_2093#1 TATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGA 273 ********************************** ************************* consensus_2093#0 ATATAGGTCGATAGGGAAAGAGAAAAAA------------------------------- 506 consensus_2093#1 ATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT 332 **************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||