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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2093 cluster # 2093       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2093#0 length = 506 sequences # 1  
consensus_2093#1 length = 332 sequences # 1  

consensusID : consensus_2093#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence
                              [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA]

[+] EMBL CD132796             [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA]


>consensus_2093#0 CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAA ATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAA GTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAA AAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACG TTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGA AAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATA ATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATA TGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAAT ATAGGTCGATAGGGAAAGAGAAAAAA



consensusID : consensus_2093#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence
                              [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT]

[+] EMBL CD198297             [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT]


>consensus_2093#1 TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAG AGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGA GGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATA ACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCA TGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAA AAGAGTTGAGAAAAATTGGAACTTGTTCAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2093#0      CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAA 60
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      ATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAA 120
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      GTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAA 180
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      AAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACG 240
consensus_2093#1      ---------------------------TACTAGTCCCACGAACCATCACTATTATTGACG 33
                                                 ***** ****** ****** *************

consensus_2093#0      TTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGA 300
consensus_2093#1      GTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGC 93
                       **** *** ***** ****** *** **  **** * *********  * *** **** 

consensus_2093#0      AAATGACAAAACCAAGAGAA--ACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAA 358
consensus_2093#1      TGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAA 153
                        *** **  *** **   *  *** * ** ******* *********************

consensus_2093#0      TAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 418
consensus_2093#1      TACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 213
                      ** *********************************************************

consensus_2093#0      TATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGA 478
consensus_2093#1      TATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGA 273
                      ********************************** *************************

consensus_2093#0      ATATAGGTCGATAGGGAAAGAGAAAAAA------------------------------- 506
consensus_2093#1      ATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT 332
                      ****************************                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)