cluster # 2096

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Schistosoma mansoni
cluster # 2096 cluster # 2096 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2096#0 length = 455 sequences # 1

consensus_2096#1 length = 409 sequences # 1

consensusID : consensus_2096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGATCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACTGATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTATTCTGCTCCCCAACCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTGAAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTACTATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAACTGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC]

[+] EMBL CD146971             [TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGATCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACTGATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTATTCTGCTCCCCAACCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTGAAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTACTATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAACTGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC]




>consensus_2096#0
TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGA
TCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACT
GATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAAT
GGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTAT
TCTGCTCCCCAACCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTGAAAAG
ACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTACTATCA
AAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAACTGTAA
AAACGATTACAACTTGGTGACTGAACAAAAACCGC

consensusID : consensus_2096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAATTAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAAAAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTATTTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGTCAATATTCATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAGCATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCTTTC]

[+] EMBL CD187415             [GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAATTAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAAAAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTATTTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGTCAATATTCATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAGCATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCTTTC]




>consensus_2096#1
GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTA
AATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAATTAAATAATAA
AAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAAAAGAGGTGGGAAT
ATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTATTTTAGTGAGAAAT
TCATTTATCCATATGATTGACTGGCATTATAGCTGATGTCAATATTCATGATGAAAAGTT
TAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAGCATACACCGACCAC
CACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2096#0      TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGA 60
consensus_2096#1      ------------------------------------------------------------
                                                                                  

consensus_2096#0      TCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACT 120
consensus_2096#1      ------------------------------------------------------------
                                                                                  

consensus_2096#0      GATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAAT 180
consensus_2096#1      ----------GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAAT 50
                                **************************************************

consensus_2096#0      GGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTAT 240
consensus_2096#1      GGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAAT 110
                      *******************************************************   **

consensus_2096#0      TCTGCTCCCCAA-----CCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTG 295
consensus_2096#1      TAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAA--- 167
                      *         **        **   **    ** *  **** * ***  ** **  *   

consensus_2096#0      AAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTAC 355
consensus_2096#1      AAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTAT 227
                      ** **   *    ***  *    **** *  *      * *  * ** * * *  * ** 

consensus_2096#0      TATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAAC 415
consensus_2096#1      TTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGT-CAATATT 286
                      * *    *    ** * ***  *    *   ****   *  * ** ** **      *  

consensus_2096#0      TGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC-------------------- 455
consensus_2096#1      CATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAG 346
                        * *  *  * *  *****     *  *    ***   *                    

consensus_2096#0      ------------------------------------------------------------
consensus_2096#1      CATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCT 406
                                                                                  

consensus_2096#0      ---
consensus_2096#1      TTC 409