These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTCTTTACATCTTGATAACTTTCA] [+] EMBL CD196088 [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTCTTTACATCTTGATAACTTTCA] consensusID : consensus_2098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAACACTCCGAGTTTGAACT] [+] EMBL CD196197 [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAACACTCCGAGTTTGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2098#0 GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC 60 consensus_2098#1 GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC 60 ************************************************************ consensus_2098#0 CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA 120 consensus_2098#1 CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA 120 ************************************************************ consensus_2098#0 ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA 180 consensus_2098#1 ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA 180 ************************************************************ consensus_2098#0 TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT 240 consensus_2098#1 TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT 240 ************************************************************ consensus_2098#0 AAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTC 300 consensus_2098#1 AAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAA---CACTCCGA 297 *************************** ****** *********** ** ** ** consensus_2098#0 TTTACATCTTGATAACTTTCA 321 consensus_2098#1 GTTTGAACT------------ 306 ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||