cluster # 2118

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Schistosoma mansoni
cluster # 2118 cluster # 2118 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2118#0 length = 553 sequences # 1

consensus_2118#1 length = 198 sequences # 1

consensusID : consensus_2118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTAAGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTATTCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCACATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTTATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTATGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATTACGTGCCANATAT]

[+] EMBL CD083029             [CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTAAGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTATTCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCACATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTTATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTATGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATTACGTGCCANATAT]




>consensus_2118#0
CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTA
AGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTAT
TCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCA
CATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTT
ATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTA
TGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGT
CTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTG
GTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATAT
TTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATT
ACGTGCCANATAT

consensusID : consensus_2118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [GTCCGATCACCTGTTCTACCACTTCACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAA]

[+] EMBL CD064011             [GTCCGATCACCTGTTCTACCACTTCACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAA]




>consensus_2118#1
GTCCGATCACCTGTTCTACCACTTCACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTT
ACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATA
CTAATTTACTGGTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGA
ATAATAAATATTTGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2118#0      CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTA 60
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      AGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTAT 120
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      TCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCA 180
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      CATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTT 240
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      ATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTA 300
consensus_2118#1      ----------------------------------------------GTCCGATCAC-CTG 13
                                                                    **   ** *  ** 

consensus_2118#0      TGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGT 360
consensus_2118#1      TTCTACCACTT--CACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGT 71
                      *    *   **  **   * *    * *********************************

consensus_2118#0      CTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTG 420
consensus_2118#1      CTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTG 131
                      ************************************************************

consensus_2118#0      GTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATAT 480
consensus_2118#1      GTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATAT 191
                      ********************* **************************************

consensus_2118#0      TTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATT 540
consensus_2118#1      TTGTGAA----------------------------------------------------- 198
                      *******                                                     

consensus_2118#0      ACGTGCCANATAT 553
consensus_2118#1      -------------