cluster # 2129

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Schistosoma mansoni
cluster # 2129 cluster # 2129 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2129#0 length = 396 sequences # 1

consensus_2129#1 length = 219 sequences # 1

consensusID : consensus_2129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTTGTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAATTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACTTTTTGGGACAGGCGAATTATTCTAACCATCTCAAGTTATTTTGGGGCATCCCATACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCTCTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG]

[+] EMBL SMRAP171             [AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTTGTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAATTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACTTTTTGGGACAGGCGAATTATTCTAACCATCTCAAGTTATTTTGGGGCATCCCATACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCTCTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG]




>consensus_2129#0
AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTT
GTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAA
TTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTAT
GTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACT
TTTTGGGACAGGCGAATTATTCTAACCATCTCAAGTTATTTTGGGGCATCCCATACAATG
TTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCTCTTGGC
GGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG

consensusID : consensus_2129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [GAATTNACCATCCTGTAGNGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACTTTCGGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANCACAANCCTGCACCCCTCNGACGAACACGTCGCTGGTCCTTTNACCTCCCTTTCNACTGCCATCAACCAAGGCCCC]

[+] EMBL SMRAP147             [GAATTNACCATCCTGTAGNGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACTTTCGGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANCACAANCCTGCACCCCTCNGACGAACACGTCGCTGGTCCTTTNACCTCCCTTTCNACTGCCATCAACCAAGGCCCC]




>consensus_2129#1
GAATTNACCATCCTGTAGNGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTTGTTA
CACGNCTACACGATATNTTCTTACTTTCGGCACAGGCCGACTTCATTCCTNACCCATCTC
AGTCTATTNTCGGTCAATCTCANCACAANCCTGCACCCCTCNGACGAACACGTCGCTGGT
CCTTTNACCTCCCTTTCNACTGCCATCAACCAAGGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2129#0      AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTT 60
consensus_2129#1      ------------------------------------------------------------
                                                                                  

consensus_2129#0      GTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAA 120
consensus_2129#1      ------------------------------------------------------------
                                                                                  

consensus_2129#0      TTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTAT 180
consensus_2129#1      ----------------------------------GAATTNACCATCCTG-TAGNGCGTAT 25
                                                        ***** * ***  ** *** ******

consensus_2129#0      GTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACT 240
consensus_2129#1      GTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACT 85
                      ****************************** ******************** ********

consensus_2129#0      TTTTGGGACAGGCGAATT--ATTC--TAACCATCTCAAGTTATTTTGGGGCA-TCCCAT- 294
consensus_2129#1      TTC-GGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANC 144
                      **  ** ******  * *  ****   * ********   **** * ** ** ** **  

consensus_2129#0      ACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCT 354
consensus_2129#1      ACAANCCTGCACCCCTCNGACGAACA--CGTCGCTGGTCCTTTNACCTCCCTTTCNA-CT 201
                      ****   ** ***     **  *      **        **** *      *  * * **

consensus_2129#0      CTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG 396
consensus_2129#1      GCCATCAACCAAGGCCCC------------------------ 219
                           *      * ***