cluster # 2136

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Schistosoma mansoni
cluster # 2136 cluster # 2136 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2136#0 length = 585 sequences # 1

consensus_2136#1 length = 568 sequences # 1

consensusID : consensus_2136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTTAATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAACAAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAACGCGCATTCTATTACTTACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATACTGCCACACTCTGAAAGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA]

[+] EMBL CD145522             [TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTTAATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAACAAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAACGCGCATTCTATTACTTACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATACTGCCACACTCTGAAAGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA]




>consensus_2136#0
TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTTA
ATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAACA
AATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAACG
CGCATTCTATTACTTACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTC
ATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTA
AAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTT
AACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAAC
GTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATACTGCCACACTCTGAAAGTCT
CGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAG
TTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA

consensusID : consensus_2136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTCTCAGTCTGACCCTCTAAATAAAGGCGTTGATGAATCAGTTTATATTTAGACTTTATCATTCTGTAGTAAGATATCCGCTCCACCAATGAGTTTAGATATAAATTAATTTCATGAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAAAGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC]

[-] EMBL CD082969             [ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTCTCAGTCTGACCCTCTAAATAAAGGCGTTGATGAATCAGTTTATATTTAGACTTTATCATTCTGTAGTAAGATATCCGCTCCACCAATGAGTTTAGATATAAATTAATTTCATGAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAAAGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC]




>consensus_2136#1
ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTCTCAGTCTGAC
CCTCTAAATAAAGGCGTTGATGAATCAGTTTATATTTAGACTTTATCATTCTGTAGTAAG
ATATCCGCTCCACCAATGAGTTTAGATATAAATTAATTTCATGAACATCTGGTGGATTGG
AAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTT
CTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAG
TCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTA
GTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGT
TCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAAAGTCTCGATATGAGATTT
TCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATATTT
TGACGAATTCCTCTAGAAAACGTCCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2136#0      -TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTT 59
consensus_2136#1      ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTC--TCAGTCTG 58
                        ** *   * ** **   ** *  *  ** **  * ** *   ***  *    * * * 

consensus_2136#0      AATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAAC 119
consensus_2136#1      ACCCTCTAAATAAAGGCGTT------GATGAATCAGTTTA------TATTTAGACTTTAT 106
                      *    **   * ***  **       *** ***  *** *      *****  * *  * 

consensus_2136#0      AAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAAC 179
consensus_2136#1      CATTCT--GTAGTAAGATATCCGCTCC--ACCAATGAGTTTAGATATAAATTAATTTCAT 162
                       * ***  **    * * *     *    * * ** *  *  *  * *** ***  * * 

consensus_2136#0      GCGCATTCTATTACTT---ACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCG 236
consensus_2136#1      GAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCG 222
                      *  ***    *   **   * ***************************************

consensus_2136#0      TCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTG 296
consensus_2136#1      TCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTG 282
                      ************************************************************

consensus_2136#0      CCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACC 356
consensus_2136#1      CCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACC 342
                      ************************************************************

consensus_2136#0      TTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGA 416
consensus_2136#1      TTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGA 402
                      ************************************************************

consensus_2136#0      AAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAAT-ACTGCCACACTCTGAA 475
consensus_2136#1      AAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAA 462
                      ******************************************* ****************

consensus_2136#0      AGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCA 535
consensus_2136#1      AGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCA 522
                      ***************** ******************************************

consensus_2136#0      TTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA 585
consensus_2136#1      TTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC---- 568
                      *************** ********** ************** ****