cluster # 2144

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Schistosoma mansoni
cluster # 2144 cluster # 2144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2144#0 length = 591 sequences # 1

consensus_2144#1 length = 569 sequences # 1

consensusID : consensus_2144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAATTA]

[+] EMBL CD083079             [GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAATTA]




>consensus_2144#0
GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCT
TATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCT
CATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAG
GTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGGCTCTACAGTTTA
TTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTG
TTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTC
CTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCA
TGCATGCTAATGGGATTATGCACAGGGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGG
AGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGAATAATAATGAGC
GACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAATTA

consensusID : consensus_2144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGG]

[+] EMBL CD083120             [GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCTCTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGTTGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGAATAATAATGAGCGACTATACAGTCATCAAGTGG]




>consensus_2144#1
GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCTTATG
AACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCTCATG
GAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAGGTTC
CTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCTCTAC
AGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGTACTG
GTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAATTCGG
AACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGAGTTG
AAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGTTGAT
TAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGAATAA
TAATGAGCGACTATACAGTCATCAAGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2144#0      GACCGAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCT 60
consensus_2144#1      ----GAATGGCTCGCAGGCTTCGCTGAACTATATACTGGCATGTTCGGGAGATTAAGTCT 56
                          ********************************************************

consensus_2144#0      TATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCT 120
consensus_2144#1      TATGAACATTCGAGTCATATGGAGCAGTACAGTATTCTTGGTCGTATTGGTGAAGGTGCT 116
                      ************************************************************

consensus_2144#0      CATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAG 180
consensus_2144#1      CATGGAGTTGTTTTAAAGGCTAAGCATATTGAGAGTGGAGAACTTGTTGCCCTGAAAAAG 176
                      ************************************************************

consensus_2144#0      GTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCG----------GCT 230
consensus_2144#1      GTTCCTTTGAGAAAACTTGCTGATGGAATTCCTAACACAGCACTTCGAGAAATAAAGGCT 236
                      ***********************************************          ***

consensus_2144#0      CTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGT 290
consensus_2144#1      CTACAGTTTATTGAGTCCAGCCCGTACGTTGTCCATCTACGAGAAGTTTTCCCTCATGGT 296
                      ************************************************************

consensus_2144#0      ACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAAT 350
consensus_2144#1      ACTGGTTTTGTTCTTGTCTTTGAGTACATGGTTACGGATCTTAGTGAGGTTATTCGGAAT 356
                      ************************************************************

consensus_2144#0      TCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGA 410
consensus_2144#1      TCGGAACCTCCTCTTACTGAAGAACAGTCTAAATGTTATATGTTAATGATACTAAGAGGA 416
                      ************************************************************

consensus_2144#0      GTTGAAGTCATGCATGCTAATGGGATTATGCACAGGG--ACCTCAAGCCTGCCAATCTGT 468
consensus_2144#1      GTTGAAGTCATGCATGCTAATGGGATTATGCACAGGGTGACCTCAAGCCTGCCAATCTGT 476
                      *************************************  *********************

consensus_2144#0      TGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTTTGGTCTTGCAAGAGTTNTCGAGA 528
consensus_2144#1      TGATTAGTGCGGAGGGGGTCCTGAAAATAGCTGACTNTGGTCTTGCAAGAGTTTTCGAGA 536
                      ************************************ **************** ******

consensus_2144#0      ATAATAATGAGCGACTATACAGTCATCAAGTGGCTACAAAGGTGGTATCGAGCACCTGAA 588
consensus_2144#1      ATAATAATGAGCGACTATACAGTCATCAAGTGG--------------------------- 569
                      *********************************                           

consensus_2144#0      TTA 591
consensus_2144#1      ---