These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [NAATTCGGCTCGAGGACCAGTACAACAACACCAACAATTTGGAAAATATTTATACATTCATACTTAATAAACTATCTCAAAATTCTGGCGGCTGTATGTATATATCTGGTATTCCGGGTACTGGTAAAACAGCATCAGTTCAAGCCGTGCTGTCTACGATGCATAAATTGGTTGCTGATTCAGGTTTGGAAAGACAGATACCCACATTCCAAGTAATCTATGTTAATGGCATGCGTGTCAGTGATCCTAAACAGGTTTACGTGGAGATATATGAAGTAAGCAATTAACTGGTTTAACTGCAACTGCAAAATGTGCTTCTGACTTGTTAGAAAAAGAATTTTGTCATAATGTAATTAAAAAAGTACCTCATGATGAAATTTCTGAAAAGCCAGTTGTTTTAGTCATTGATGAATTGGATTTGTTATGTACTCGTCGACAAGACATACTTTACAGTCTTTTTGATTGGCCTACACGCCATAATAACCATCGTGTATTAATAGTATTGGCTATTGCCAATACTATGGATCTACCGGAACGTTTACTTCACCCACGAGTGGCCAGTCGTTTAGGCTTAACTAGACTTACTTTTGCACCTTATTCTCACGAACAACTTGCTCANATTGTGCGACATCATTTATCGTCTNTATCANATATGTTT] [+] EMBL CD083129 [NAATTCGGCTCGAGGACCAGTACAACAACACCAACAATTTGGAAAATATTTATACATTCATACTTAATAAACTATCTCAAAATTCTGGCGGCTGTATGTATATATCTGGTATTCCGGGTACTGGTAAAACAGCATCAGTTCAAGCCGTGCTGTCTACGATGCATAAATTGGTTGCTGATTCAGGTTTGGAAAGACAGATACCCACATTCCAAGTAATCTATGTTAATGGCATGCGTGTCAGTGATCCTAAACAGGTTTACGTGGAGATATATGAAGTAAGCAATTAACTGGTTTAACTGCAACTGCAAAATGTGCTTCTGACTTGTTAGAAAAAGAATTTTGTCATAATGTAATTAAAAAAGTACCTCATGATGAAATTTCTGAAAAGCCAGTTGTTTTAGTCATTGATGAATTGGATTTGTTATGTACTCGTCGACAAGACATACTTTACAGTCTTTTTGATTGGCCTACACGCCATAATAACCATCGTGTATTAATAGTATTGGCTATTGCCAATACTATGGATCTACCGGAACGTTTACTTCACCCACGAGTGGCCAGTCGTTTAGGCTTAACTAGACTTACTTTTGCACCTTATTCTCACGAACAACTTGCTCANATTGTGCGACATCATTTATCGTCTNTATCANATATGTTT] consensusID : consensus_2146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [AAGAAGTGGCTATGGCTCGCATTGTTGCCTGTTTAAACTCACCACAAGAACTTGAAATCAACCTTAAATACGAACTCTTAATGTCCGATGGATAGCGAAGATTCATATGATGAAAGTTCTAGCTCGACAAGTGAATCAAGTTTTTCGACATATAATTCATCAGATTCTTCCGACTTAACTGAACGACAATTTCAACACAGAAACAGATCGAAAGGTCCTATAATAAAGTCATTCCCCGTAAGGAGAACAAAGCTCAATTTATGTGCCAACAAAAGCTCTATATTGGCTCATAGGAAGCGCACTCTTAGTCAAGTGTCCCGTGGTGAGTCTTTTCTTAATTTAAGTTCTACGAATTCGGAATATGGATGGTTACCTGGTCGTGAACAAGAATTTGAAAATATTTATACATTCATACTTAATAAACTATCTCAAAATTCTGGCGGCTGTATGTATATATCTGGTATTCCGGGTACTGGTAAAACAGCATCAGTTCAAGCCGTGCTGTCTACGATGCATAAATTGGTTGCTGATTCAGGTTTGGAAAGCCAGATACCCACATTCCAAGTAATCTATGTTAATGGCATGCGTGTCAGT] [+] EMBL CD114126 [AAGAAGTGGCTATGGCTCGCATTGTTGCCTGTTTAAACTCACCACAAGAACTTGAAATCAACCTTAAATACGAACTCTTAATGTCCGATGGATAGCGAAGATTCATATGATGAAAGTTCTAGCTCGACAAGTGAATCAAGTTTTTCGACATATAATTCATCAGATTCTTCCGACTTAACTGAACGACAATTTCAACACAGAAACAGATCGAAAGGTCCTATAATAAAGTCATTCCCCGTAAGGAGAACAAAGCTCAATTTATGTGCCAACAAAAGCTCTATATTGGCTCATAGGAAGCGCACTCTTAGTCAAGTGTCCCGTGGTGAGTCTTTTCTTAATTTAAGTTCTACGAATTCGGAATATGGATGGTTACCTGGTCGTGAACAAGAATTTGAAAATATTTATACATTCATACTTAATAAACTATCTCAAAATTCTGGCGGCTGTATGTATATATCTGGTATTCCGGGTACTGGTAAAACAGCATCAGTTCAAGCCGTGCTGTCTACGATGCATAAATTGGTTGCTGATTCAGGTTTGGAAAGCCAGATACCCACATTCCAAGTAATCTATGTTAATGGCATGCGTGTCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2146#0 NAATTCGGCTCGAGGACCAGTACAACAACACCAACAATTTGGAAAATATTTATACATTCA 60 consensus_2146#1 ----------------------AAGAAGTGGCTATGGCTCGCA---TTGTTGCCTGTTTA 35 * * * * * * * * ** ** * consensus_2146#0 TACTTAATAAACTATCTCAAAATTCTGGCGGCTGTATGTATATATCTGGTAT-TCCGGGT 119 consensus_2146#1 AACTCACCACAAGAACTTGAAAT-----CAACCTTAAATACGAACTCTTAATGTCCGATG 90 *** * * * * ** **** * * ** ** * ** **** consensus_2146#0 ACTGGTAAAACAGCATCAGTTCAAGCCGTGCTGTCTACGATGCATAAATTGGTTGCTGAT 179 consensus_2146#1 GATAGCGAAGATTCATATGATGAAA--GTTCTAGCT-CGACAAGTGAATCAA--GTTTTT 145 * * ** *** * * ** ** ** ** *** * *** * * * consensus_2146#0 TCAGGTTTGGAAAGACAGATACCCACATTCCAAGTAATCTATGTTAATGGCATGCGTGTC 239 consensus_2146#1 CGACATATAATTCATCAGATTCTTCCGACTTAACTGA---ACGACAATTTCA-ACACAGA 201 * * * ***** * * ** * * * * *** ** * consensus_2146#0 AGTGATCCTAAACAGGTTTACGTGGAGATATATGAAGTAAGCAATTAACTGGTTTAACTG 299 consensus_2146#1 AACAGATCGAAAGGTCCTATAATAAAGTCATTCCCCGTAAGGAG--AACAAAGCTCAATT 259 * * *** * * ** ** ***** * *** * * * consensus_2146#0 CAACTGCAAAATGTGCTTCTGACTTGTTAGAAAAAGAATTTTGTCATAATGTAATTAAAA 359 consensus_2146#1 TATGTGCCAACAAAAGCTCTATATTGGCTCATAGGAAGCGCACTCTTAGTC--------- 310 * *** ** *** *** * * * ** ** * consensus_2146#0 AAGTACCTCATGATGAAATTTCTGAAAAGCCAGTTGTTTTAGTCATTGATGAATTGGATT 419 consensus_2146#1 AAGTGTCCCGTGGTGAGTCTTTTCTTAATTTAA--GTTCTACGAATTCG-GAATATGGAT 367 **** * * ** *** ** * ** * *** ** *** **** * * consensus_2146#0 TGTTATGTACTCGTCGACAAGACATACTTTACAGTCTTTTTG-ATTGGCCTACACGCCAT 478 consensus_2146#1 GGTTACCTGGTCGTGAACAAGA---ATTTGAAAATATTTATACATTCATACTTAATAAAC 424 **** * **** ****** * ** * * * *** * *** * * consensus_2146#0 AATAACCATCGTGTATTAATAGTATTGGCTATTGCCAATACTATGGATCTACCGGAACGT 538 consensus_2146#1 TATCTCAAAATTCTGGCGGCTGTAT-GTATATATCTGGTATTCCGGGT--ACTGGTAAAA 481 ** * * * * **** * *** * ** * ** * ** ** * consensus_2146#0 TTACTTCACCCACGAGTGGCCAGTCGTTTAGGCTTAACTAGACTTACTTTTGCACCTTAT 598 consensus_2146#1 CAGCATCAGTT-CAAGCCGT--GCTGTCTACGATGCA-TAAATTGGTTGCTG-ATTCAGG 536 * *** * ** * * ** ** * * * ** * * * ** * consensus_2146#0 TCTCACGAACAACTTGCTCANATTGTGCGACATCATTTATCGTCTNTATCANATATGTTT 658 consensus_2146#1 TTTGGAAAGCCAGATACCCACATT---CCAAGTAATCTAT-GTTAATGGCATGCGTGTCA 592 * * * * * * * ** *** * * * ** *** ** * ** *** consensus_2146#0 -- consensus_2146#1 GT 594 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||