These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [TACAGTAACATCAGTTCAAAACTATGAATTTGCCAATACTTGGCACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCACTTGTAAGTGGAATGTTTGTTTATTTCTGTTATATTCACTTCATTCTTTATTATTATGTCATATAGACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATTAATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACGTTGACAGTT] [+] EMBL CD083343 [TACAGTAACATCAGTTCAAAACTATGAATTTGCCAATACTTGGCACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCACTTGTAAGTGGAATGTTTGTTTATTTCTGTTATATTCACTTCATTCTTTATTATTATGTCATATAGACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATTAATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACGTTGACAGTT] consensusID : consensus_2164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGAAACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACTTGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT] [+] EMBL SM921 [ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGAAACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACTTGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2164#0 -TACAGTAACATCAGTTCAAAACTA-TGAATTTGCCAATACTTGGCACGACATTCAACAA 58 consensus_2164#1 ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGA 60 ** * ***** **** * * ** * * * * * * * *** * consensus_2164#0 AACTGTT----CGTTTTCTTCAACTGTCTTTTCACTTGTAAGTG-GAATGTTTGTTTATT 113 consensus_2164#1 AACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACT 120 **** ** ** * *** * * * ** * ** * **** ** * consensus_2164#0 TCTGTTATATTCAC--------TTCATTCTTTATTATTATGTCATATAGACATTTGGCAT 165 consensus_2164#1 TGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCAT 180 * * ***** *** ** * * * * * * * *********** consensus_2164#0 TATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATT 225 consensus_2164#1 TATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATT 240 ************************************************************ consensus_2164#0 GCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATT 285 consensus_2164#1 GCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATT 300 ****************************** ***************************** consensus_2164#0 AGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCA 345 consensus_2164#1 AGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCA 360 ***************************** ****************************** consensus_2164#0 TCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATT 405 consensus_2164#1 TCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT------------- 407 *********** ****** ********** ***************** consensus_2164#0 AATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACG 465 consensus_2164#1 ------------------------------------------------------------ consensus_2164#0 TTGACAGTT 474 consensus_2164#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||