cluster # 2170

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Schistosoma mansoni
cluster # 2170 cluster # 2170 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2170#0 length = 529 sequences # 1

consensus_2170#1 length = 418 sequences # 1

consensusID : consensus_2170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTGCCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGAGAAACTTAACAACTAAAAGTAAAGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTCTACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGCGAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTTTGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGAATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT]

[+] EMBL CD083368             [CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTGCCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGAGAAACTTAACAACTAAAAGTAAAGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTCTACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGCGAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTTTGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGAATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT]




>consensus_2170#0
CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAA
ATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTG
CCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGAGAAACTTAACAACTAAAAGTAAAGT
TTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTCTAC
AAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCAATA
TCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGCGAA
CAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTTTGT
GATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGAATT
ATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT

consensusID : consensus_2170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [ACGAGTCATAAAGATTNGGANCTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNGCCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAATGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTCTACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGCGAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNATCANGATGTTTGGGATTTTGGGGATCANACTCTNAAAC]

[+] EMBL SM4051               [ACGAGTCATAAAGATTNGGANCTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNGCCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAATGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTCTACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGCGAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNATCANGATGTTTGGGATTTTGGGGATCANACTCTNAAAC]




>consensus_2170#1
ACGAGTCATAAAGATTNGGANCTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGG
TTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNGCCANTNCGANGGGAAAAAGA
AGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAATGTNNTCACAAAAACAATTA
NCAAGGACATCACAACTCAAGGACANGATCAAACATGTTCTACAANCGAATAAATGACTA
TATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCAATATCTAGAGCAAAATACTT
CAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGCGAACANATTTCTTGGATTGA
TTNTGGTCNANATCCTCCNATCANGATGTTTGGGATTTTGGGGATCANACTCTNAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2170#0      CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAA 60
consensus_2170#1      -------------------ACGAGTCATAAAGATTNG-GANCTATTCATCTTAGAAGTAA 40
                                           * ************   ** *******************

consensus_2170#0      ATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTG 120
consensus_2170#1      ATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNG 100
                      *********************************************************  *

consensus_2170#0      CCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGA---GAAACTTAACAACTAAAAGTAA 177
consensus_2170#1      CCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAA 160
                      *** * *** ********************** **   *** **** *************

consensus_2170#0      AGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTC 237
consensus_2170#1      TGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTC 220
                       **  *************** ******************* **** *** **********

consensus_2170#0      TACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCA 297
consensus_2170#1      TACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCA 280
                      ***** ******************** ************** **** *************

consensus_2170#0      ATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGC 357
consensus_2170#1      ATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGC 340
                      ******************************************** ************ **

consensus_2170#0      GAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTT 417
consensus_2170#1      GAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNAT-CANGATGTTTGGGATTTT 399
                      ***** ******* ** *** * * **  * ***** * ** ** ********  *****

consensus_2170#0      TGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGA 477
consensus_2170#1      GGGGATCANA-CTCTNAAAC---------------------------------------- 418
                       * ***** * **** ****                                        

consensus_2170#0      ATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT 529
consensus_2170#1      ----------------------------------------------------