These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACATACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATACATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCCCACTAATCACACAGCAAATACACCCCAAAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTTGCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTAGTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCC] [+] EMBL CD185559 [AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACATACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATACATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCCCACTAATCACACAGCAAATACACCCCAAAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTTGCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTAGTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCC] consensusID : consensus_2171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AAGAAGCTGCGAAGCTTGCCAACGCCCACGGATTCATTCAACAACTCCCAGATAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGTTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAAAGGTATCAAAATTTCCCCAACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGATTCTGTATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGACTACTGTGA] [-] EMBL CD064198 [AAGAAGCTGCGAAGCTTGCCAACGCCCACGGATTCATTCAACAACTCCCAGATAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGTTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAAAGGTATCAAAATTTCCCCAACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGATTCTGTATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGACTACTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2171#0 -AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACA 59 consensus_2171#1 AAGAAGCTG--CGAAGCTTGC--CAACGCCCACGGATTCATTCAACAAC----TCCCAGA 52 * *** ** * * ** * * * * ** *** ** * ***** * consensus_2171#0 TACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATA 119 consensus_2171#1 TAGAATATTGGAAAGTGCTGAGAAC-GATGATAGTGAATTATTTGATGAAGGATCTCAAA 111 ** ** * * * * * * *** * * * * *** ** * * consensus_2171#0 CATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCC---CACTAATCACACAGCA 176 consensus_2171#1 -ATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATG 170 ** * * * * * *** ** ***** * ** ** * * * consensus_2171#0 AATACACCCCA--AAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTT 234 consensus_2171#1 GATAATGGTGAGGAAAGTATATCTGAAACAACTGGAA-ATGTTCCTTATGGAAATTTTTC 229 *** * *** ** ***** * *** * ** * ** * * ** consensus_2171#0 GCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTA 294 consensus_2171#1 CCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAA------AGGTATCAAAATTTC 283 * ** * * * ** **** * * * * ** consensus_2171#0 GTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGAT 354 consensus_2171#1 CCC-------AACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCT--CTGATAGT 334 ** *** * * * ** **** ** * * * consensus_2171#0 CTCAAAATAAATATGTCGT-CAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGT 413 consensus_2171#1 TTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGAT-TCTGT 393 * * ** ** ** * *** * ** * * * ** * *** consensus_2171#0 AAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAAT 473 consensus_2171#1 ATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGAC 453 * * ** * * * * * ** * * ** **** ** * * consensus_2171#0 TTTTCCCTTATTTCAACAATTTCAGTCC 501 consensus_2171#1 TACTGTGA-------------------- 461 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||