cluster # 2174

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Schistosoma mansoni
cluster # 2174 cluster # 2174 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2174#0 length = 346 sequences # 1

consensus_2174#1 length = 129 sequences # 1

consensusID : consensus_2174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTATACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGTGATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCATAATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAGGGACCACTTATTCTAATGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGGGTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC]

[+] EMBL CD166419             [AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTATACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGTGATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCATAATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAGGGACCACTTATTCTAATGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGGGTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC]




>consensus_2174#0
AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTAT
ACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGT
GATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCAT
AATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAGGGACCACTTATTCTAAT
GGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGGG
TTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC

consensusID : consensus_2174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAATGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGGTTTAATTCATCGAATAGACGGAGC]

[+] EMBL SMAA25569            [ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAATGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGGTTTAATTCATCGAATAGACGGAGC]




>consensus_2174#1
ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAATGGTTTAACTTTCTT
GGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGGTTTAATTCATCGAAT
AGACGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2174#0      AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTAT 60
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      ACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGT 120
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      GATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCAT 180
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      AATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAG-GGACCACTTATTCTAA 239
consensus_2174#1      ---------------ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAA 45
                                      ****   **  ** ************* **** ***********

consensus_2174#0      TGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGG 299
consensus_2174#1      TGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGG 105
                      *** ***************** ****************** *******************

consensus_2174#0      GTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC 346
consensus_2174#1      TTTAATTCATCGAATAGACGGAGC----------------------- 129
                       ******************** **