cluster # 2175

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Schistosoma mansoni
cluster # 2175 cluster # 2175 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2175#0 length = 446 sequences # 1

consensus_2175#1 length = 349 sequences # 1

consensusID : consensus_2175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACATCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATTTGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAGTACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGAAGGAGCACCATATCGTAAATCAATCCTAACTAATTTTAGTTCGGATTCCTTCTGTTTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGTCGAATCACTTGTTGATGGAGTCTCTTTTCGA]

[+] EMBL CD083391             [CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACATCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATTTGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAGTACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGAAGGAGCACCATATCGTAAATCAATCCTAACTAATTTTAGTTCGGATTCCTTCTGTTTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGTCGAATCACTTGTTGATGGAGTCTCTTTTCGA]




>consensus_2175#0
CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACA
TCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATT
TGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCA
ATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAG
TACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGA
AGGAGCACCATATCGTAAATCAATCCTAACTAATTTTAGTTCGGATTCCTTCTGTTTGGT
TCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGTCGAAT
CACTTGTTGATGGAGTCTCTTTTCGA

consensusID : consensus_2175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [ATGGTAACAATGATTTCATTATTTGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAATGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAAAGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGTGTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGTTTACAACTTAGTTCGATCCTTCTGTT]

[-] EMBL CD126215             [ATGGTAACAATGATTTCATTATTTGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAATGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAAAGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGTGTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGTTTACAACTTAGTTCGATCCTTCTGTT]




>consensus_2175#1
ATGGTAACAATGATTTCATTATTTGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACT
GCATTCATATTGATTCGCTTTCAATCTTGGTATATGCCGTTATATTCGTATTCCAATACA
GCTGAATATCAAAACTACGAAAATGCGGCTGTATTTATGGTTTCCACGTATCAATATATA
ATTTTGGCCATTGCCTTTTCAAAAGGAGCACCATATCGTAAATCAATCTTAACTAATTAT
GCATTTGTGCTGAATATTTTGGTGTGTTTTGTATTCAGTCTTTACATTGACAACTTATCC
AGTTAATTGGATATCTTGAACGTTTACAACTTAGTTCGATCCTTCTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2175#0      CACGAGGGTCATAATTACAACGTTAGGTTTAACATTTGGATATACACATGCTTATCCACA 60
consensus_2175#1      ------------------------------------------------------------
                                                                                  

consensus_2175#0      TCTTTCTGCTGAACCACCTACAATGAGACTTTTGAGCATGGTAACAATGTCTTCATTATT 120
consensus_2175#1      -------------------------------------ATGGTAACAATGATTTCATTATT 23
                                                           ************  *********

consensus_2175#0      TGGTCAGGTGATTATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCA 180
consensus_2175#1      TGGTCAGGTGATAATTGGTTTTATTATCCAGGCAACTGCATTCATATTGATTCGCTTTCA 83
                      ************ ***********************************************

consensus_2175#0      ATCTTGGTATATGCCGTTATATTCGTACTCTAATATATCCGAATTTCGAAACTATGAAAG 240
consensus_2175#1      ATCTTGGTATATGCCGTTATATTCGTATTCCAATACAGCTGAATATCAAAACTACGAAAA 143
                      *************************** ** **** * * **** ** ****** **** 

consensus_2175#0      TACATCTGTATTTATAGTCTCCGCTTATCAATATATAATTTTGGCCATTGCCTTTTCAGA 300
consensus_2175#1      TGCGGCTGTATTTATGGTTTCCACGTATCAATATATAATTTTGGCCATTGCCTTTTCAAA 203
                      * *  ********** ** *** * ********************************* *

consensus_2175#0      AGGAGCACCATATCGTAAATCAATCCTAACTAATT-----TTAGTTCGGATTCCTTCTGT 355
consensus_2175#1      AGGAGCACCATATCGTAAATCAATCTTAACTAATTATGCATTTGTGCTGAATATTTTGGT 263
                      ************************* *********     ** ** * ** *  **  **

consensus_2175#0      TTGGTTCATACTCATTTTACACTCTATGGTTTTGGCGAATTTTATGGCTAGTTATATTGT 415
consensus_2175#1      GTGTTTTGTATTCAGTCTTTACATTGACAACTTATCCAGTTAATTGGATATCTTGAACGT 323
                       ** **  ** *** * *  **  *      **  * * **   *** **  *  *  **

consensus_2175#0      CGAATCACTTGTTGATGGAGTCTCTTTTCGA 446
consensus_2175#1      TTA-CAACTTAGT--TCGATCCTTCTGTT-- 349
                        *   ****  *  * **  **  * *