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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2184 cluster # 2184       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2184#0 length = 528 sequences # 1  
consensus_2184#1 length = 484 sequences # 1  

consensusID : consensus_2184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence
                              [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA]

[+] EMBL CD084426             [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA]


>consensus_2184#0 ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAAC TACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATT TTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATC AACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCA TTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTA CGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTT GTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATA TATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATT GCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA



consensusID : consensus_2184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT]

[+] EMBL CD083412             [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT]


>consensus_2184#1 GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAAT CTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAG TATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATA ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA TCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2184#0      ------------------------------------------------------------
consensus_2184#1      GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAAT 60
                                                                                  

consensus_2184#0      ------------------------------------------------------------
consensus_2184#1      CTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAG 120
                                                                                  

consensus_2184#0      -------------------------------------------ACCCGGACGTACTTATA 17
consensus_2184#1      TATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATA 180
                                                                    ** *  * ******

consensus_2184#0      ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 77
consensus_2184#1      ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 240
                      ************************************************************

consensus_2184#0      TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 137
consensus_2184#1      TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 300
                      ************************************************************

consensus_2184#0      TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 197
consensus_2184#1      TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 360
                      ************************************************************

consensus_2184#0      ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 257
consensus_2184#1      ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 420
                      ************************************************************

consensus_2184#0      ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 317
consensus_2184#1      ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 480
                      ************************************************************

consensus_2184#0      TCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAA 377
consensus_2184#1      TCCT-------------------------------------------------------- 484
                      ** *                                                        

consensus_2184#0      GGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAAT 437
consensus_2184#1      ------------------------------------------------------------
                                                                                  

consensus_2184#0      CACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATC 497
consensus_2184#1      ------------------------------------------------------------
                                                                                  

consensus_2184#0      GTAGTCACTGAAACATTCTTATGCGGGATAA 528
consensus_2184#1      -------------------------------
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)