cluster # 2184

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Schistosoma mansoni
cluster # 2184 cluster # 2184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2184#0 length = 528 sequences # 1

consensus_2184#1 length = 484 sequences # 1

consensusID : consensus_2184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA]

[+] EMBL CD084426             [ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA]




>consensus_2184#0
ACCCGGACGTACTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAAC
TACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATT
TTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATC
AACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCA
TTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTA
CGCAGTTATTATGATGATCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTT
GTAACTAGTTATCACAAGGCTGTATTTCATGCACACTTGTCCATATATATAATATATATA
TATATACATATATAAATCACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATT
GCCATCTTATCATTATCGTAGTCACTGAAACATTCTTATGCGGGATAA

consensusID : consensus_2184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT]

[+] EMBL CD083412             [GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAATCTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAGTATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATAATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTGTTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAGTTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAAATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTCATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGATCCT]




>consensus_2184#1
GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAAT
CTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAG
TATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATA
ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG
TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG
TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA
ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC
ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA
TCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2184#0      ------------------------------------------------------------
consensus_2184#1      GCGAGGCCACGAATCGGCACGAGGGTTTGAACCGTAATGTACTTCTAGCGATATTTGAAT 60
                                                                                  

consensus_2184#0      ------------------------------------------------------------
consensus_2184#1      CTTGTCCAACTCTACAATTGTGTGCCAATAATCATATTAGTAAAACTAGTCTGTGGAGAG 120
                                                                                  

consensus_2184#0      -------------------------------------------ACCCGGACGTACTTATA 17
consensus_2184#1      TATCTCGTTACCATGGCGATAATGGTCATATGAATAACACATTGAACGTAGATTCTTATA 180
                                                                    ** *  * ******

consensus_2184#0      ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 77
consensus_2184#1      ATGGGAATCCTGTTGGAGTTGAATTTGTTAGACCTACTATAACTACCATCAATCCACCTG 240
                      ************************************************************

consensus_2184#0      TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 137
consensus_2184#1      TTACTGTTGCATGTGAACTAACTAATTCACATACCTTAAAATTTTGTCCAAATTGTTCAG 300
                      ************************************************************

consensus_2184#0      TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 197
consensus_2184#1      TTGGCTGTTGTAACTGGTGTTCATCATCATCATCATCATCATCAACAACCAGTAAGAAAA 360
                      ************************************************************

consensus_2184#0      ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 257
consensus_2184#1      ATATCCACTGGTCAAATGTCAATATCTCGTCAGAAATTTCTCATTTTTACAACTCTTTTC 420
                      ************************************************************

consensus_2184#0      ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 317
consensus_2184#1      ATTATACAGATTATTTACTTTATCCAGATTAAAACTGGTTCTACGCAGTTATTATGATGA 480
                      ************************************************************

consensus_2184#0      TCATTGTCATCATCACTATCAACATACACTATTTCTCCTATTTGTAACTAGTTATCACAA 377
consensus_2184#1      TCCT-------------------------------------------------------- 484
                      ** *                                                        

consensus_2184#0      GGCTGTATTTCATGCACACTTGTCCATATATATAATATATATATATATACATATATAAAT 437
consensus_2184#1      ------------------------------------------------------------
                                                                                  

consensus_2184#0      CACTTTCCTGTTCCCGATTTTTTTTTCATTTACTTGTAGAATTGCCATCTTATCATTATC 497
consensus_2184#1      ------------------------------------------------------------
                                                                                  

consensus_2184#0      GTAGTCACTGAAACATTCTTATGCGGGATAA 528
consensus_2184#1      -------------------------------