cluster # 2192

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2192 cluster # 2192 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2192#0 length = 547 sequences # 1

consensus_2192#1 length = 352 sequences # 1

consensusID : consensus_2192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGAGAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGTCCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGTGGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGTACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAATTGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTAT]

[+] EMBL CD117534             [CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGAGAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGTCCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGTGGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGTACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAATTGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTAT]




>consensus_2192#0
CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGA
GAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGT
CCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGT
GGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGT
ACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAAT
TGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTA
TGTCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCC
ATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTA
CGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGAC
ATTGTAT

consensusID : consensus_2192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TACTTTCAGCTGACTGAGGTACTAATTGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGATGCGACCTTCAAGAATGTCGCAAAGAG]

[-] EMBL CD131181             [TACTTTCAGCTGACTGAGGTACTAATTGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTATGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGATGCGACCTTCAAGAATGTCGCAAAGAG]




>consensus_2192#1
TACTTTCAGCTGACTGAGGTACTAATTGCGAAGCATACAATATGGTGGTATCAATGCATA
ATCCATCCAGCCCAGCAGGGCTTTTATGTGTTTTTCTTCCCACAAATTGGACAATTCAGC
CTGGGCCAAAGAACCTCTCTACGTAGAAAAGCTTCCATATCAAATGCCTCTACATGTTGA
CAACCTGCAATACGACCAGGTATACGCATTCTCGTACGAAATACTGGACATACTAAATTC
AATTCAGCAATAACAGGTGTTTGAGAAGGTCCAGACATTGTATTCCGAGTTACGCTACCG
TCTTCATTCAAGTTTCGTGTACCGATGCGACCTTCAAGAATGTCGCAAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2192#0      CGTTGTTGCTGAGGTGAAATTCTTTGTAAAGGCGATTGATTCCAATCAGGTATTGTTTGA 60
consensus_2192#1      ------------------------------------------------------------
                                                                                  

consensus_2192#0      GAGACATTTGTATGGCAATGAGTAGTAATTTGTCGTACTCCAACACTGCTGGGATTTTGT 120
consensus_2192#1      ------------------------------------------------------------
                                                                                  

consensus_2192#0      CCACGAAGTGAACCTTTTGACGAGATCTGATTAAAAGCCTGAGATACTACTTCTGTCAGT 180
consensus_2192#1      ------------------------------------------------------------
                                                                                  

consensus_2192#0      GGACCAATTAAAGGTTGCCATTGATCAACTTCATTAGGCAGATCTAAACATAATGGGGGT 240
consensus_2192#1      ------------------------------------------------------------
                                                                                  

consensus_2192#0      ACCAATCGCCAATAACCATCTGAGCGTACAAGAATACTTTCAGCTGACTGAGGTACTAAT 300
consensus_2192#1      ----------------------------------TACTTTCAGCTGACTGAGGTACTAAT 26
                                                        **************************

consensus_2192#0      TGCGAAGCACACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTA 360
consensus_2192#1      TGCGAAGCATACAATATGGTGGTATCAATGCATAATCCATCCAGCCCAGCAGGGCTTTTA 86
                      ********* **************************************************

consensus_2192#0      TGT----------CCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAG 410
consensus_2192#1      TGTGTTTTTCTTCCCACAAATTGGACAATTCAGCCTGGGCCAAAGAACCTCTCTACGTAG 146
                      ***          ***********************************************

consensus_2192#0      AAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACG 470
consensus_2192#1      AAAAGCTTCCATATCAAATGCCTCTACATGTTGACAACCTGCAATACGACCAGGTATACG 206
                      ************************************************************

consensus_2192#0      CATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGA 530
consensus_2192#1      CATTCTCGTACGAAATACTGGACATACTAAATTCAATTCAGCAATAACAGGTGTTTGAGA 266
                      ************************************************************

consensus_2192#0      AGGTCCAGACATTGTAT------------------------------------------- 547
consensus_2192#1      AGGTCCAGACATTGTATTCCGAGTTACGCTACCGTCTTCATTCAAGTTTCGTGTACCGAT 326
                      *****************                                           

consensus_2192#0      --------------------------
consensus_2192#1      GCGACCTTCAAGAATGTCGCAAAGAG 352