cluster # 2210

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Schistosoma mansoni
cluster # 2210 cluster # 2210 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2210#0 length = 570 sequences # 1

consensus_2210#1 length = 380 sequences # 1

consensusID : consensus_2210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTTTTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACATATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGAATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTCTGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTGATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAATTTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT]

[+] EMBL CD185989             [TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTTTTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACATATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGAATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTCTGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTGATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAATTTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT]




>consensus_2210#0
TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGTAATGGAATAGGATCGACTATTATCA
ACATCATCATTCGAGGCATTTTTAATAAATACGTTTTCTGGAATTATTGATCGAGTACAT
GAAATATTCAGCTGCTTACCGTCAGCTAATGACATATCACTATAAGCATTGATTGCATGG
CTACGGGATCGTGCTACATTAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTA
GTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCTACAAATGA
ATCAGAAACATCACTCAAAATATATGGTAATGAGAATAGTTGGAATTGTGTAATTTAACT
AAGTGCATAATATTAAAGGAAACTTTCATCAAGTCTGAATATCCAGTACAAATACCACAA
AGTAAATGCTTAAATGTTTGTGTACTATAGCTTTGATGTTCGTTGTGTTATAGTTTATGA
TGGGACCCGACAAATCAGACAAAAAGCAAAGGAATTTACCAATCCATAGATAGTTGTTAG
ATATTTCACCACTCTTTTCTTCGAGTATAT

consensusID : consensus_2210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTATACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGTATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCAATTGAGCGTAGTTACTTCGACGTTCTTGTCTTGCAGTTGAGAAAATCTTTTTAGTTGACAGGG]

[+] EMBL CD064410             [AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTATACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGTATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCAATTGAGCGTAGTTACTTCGACGTTCTTGTCTTGCAGTTGAGAAAATCTTTTTAGTTGACAGGG]




>consensus_2210#1
AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGT
AATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTA
TACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGT
ATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACG
AGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGC
ACGCCAAGGTCGTGTCAATTGAGCGTAGTTACTTCGACGTTCTTGTCTTGCAGTTGAGAA
AATCTTTTTAGTTGACAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2210#0      -------------------------TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGT 35
consensus_2210#1      AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGT 60
                                               ****** ** ********************* ***

consensus_2210#0      AATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTT 95
consensus_2210#1      AATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTA 120
                      *********************************************************** 

consensus_2210#0      TTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACAT 155
consensus_2210#1      TACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGT 180
                      * ******************************************************** *

consensus_2210#0      ATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACG 215
consensus_2210#1      ATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACG 240
                      ******************************************** ***************

consensus_2210#0      AGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGC 275
consensus_2210#1      AGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGC 300
                      ************************************************************

consensus_2210#0      ACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGA 335
consensus_2210#1      ACGCCAAGGTCGTGTC----AATTGAGCGTAG---TTACTTCGACGTTCTTGTCTTGC-A 352
                      ****************    ***  * *  *    * ***   *   * * **  **  *

consensus_2210#0      ATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTC 395
consensus_2210#1      GTTGAGAAAATCTTTTTAGTTGACAGGG-------------------------------- 380
                       * *    ***  * * * ** **   *                                

consensus_2210#0      TGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTG 455
consensus_2210#1      ------------------------------------------------------------
                                                                                  

consensus_2210#0      ATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAAT 515
consensus_2210#1      ------------------------------------------------------------
                                                                                  

consensus_2210#0      TTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT 570
consensus_2210#1      -------------------------------------------------------