These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAATTAATGAATTAAGAGAATATTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAATTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAAATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATACACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTATAGTCAAGCTTGTCTATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAGATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACAATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT] [+] EMBL CD083525 [ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAATTAATGAATTAAGAGAATATTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAATTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAAATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATACACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTATAGTCAAGCTTGTCTATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAGATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACAATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT] consensusID : consensus_2212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [AGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTACGAAATTATGCCAAAAGACGATCAAGACATTCGCAAGCTAAATCATCATCTCCCATATCTAGAGCGGCGATGAACACCTGTTCCAAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTTTCTGTTGAGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTAC] [+] EMBL CD096925 [AGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTACGAAATTATGCCAAAAGACGATCAAGACATTCGCAAGCTAAATCATCATCTCCCATATCTAGAGCGGCGATGAACACCTGTTCCAAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTTTCTGTTGAGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2212#0 ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAAT 60 consensus_2212#1 ---AGCTATTAAAATTGTAATCATTCGTTTACGGGC-CAATGTATTGGTTGGATCATCTT 56 ** **** * ** * **** ** *** * * consensus_2212#0 TAATGAATTAAGAGAATA--TTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAA 118 consensus_2212#1 TTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACA 116 * **** ** *** * * *** * * ** ** ** * * * * consensus_2212#0 TTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAA 178 consensus_2212#1 TACCAAAAAGACGATTAACACGACAACTATTACGAA-----ATTATGCCAAAAGACGATC 171 * * *** * ** **** ** * * * * consensus_2212#0 ATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATAC 238 consensus_2212#1 AAGACATT-CGCAAGCTAAATCATCATCTCCCATATCTAGAGCG-GCGATGAACACCTGT 229 * ** *** ** * * ******** **** * ** ** * * consensus_2212#0 ACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTA--TAGTCAAGCTTGTC 296 consensus_2212#1 TCC-AAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTT 288 * ** * ** * * **** * * * * * **** * * * * * consensus_2212#0 TATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAG 356 consensus_2212#1 TCTGTTGAGCTATTAAAATT-GTAATC-ATTCGTTTACGGGCCAATGTATTG---GTTGG 343 * * ** *** *** ** *** * ** ** * * * * * ** * consensus_2212#0 ATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACA 416 consensus_2212#1 ATCATCTTTTATGAGTTTTGAGTAC-ACATTTTGAGCATCTTCGAAGTTTCCTTTACTTT 402 ** *** * *** * * * ** * ** * * * ** * *** consensus_2212#0 ATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT 465 consensus_2212#1 CTA-AGTACATACCAAAAAGACG-ATTAACACGACAACTATTAC----- 444 * * * * * *** ** * * * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||