These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [AGAATATTGTGATTTATAATTTCTAGATGCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCATCGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATAGTAGTAGTACTAATAATAGTAACCAATGGTAAGGT] [+] EMBL CD083703 [AGAATATTGTGATTTATAATTTCTAGATGCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCATCGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATAGTAGTAGTACTAATAATAGTAACCAATGGTAAGGT] consensusID : consensus_2219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTTATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATAAACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT] [-] EMBL CD147028 [TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTTATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATAAACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2219#0 ------------------------------------------------------------ consensus_2219#1 TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTT 60 consensus_2219#0 ------------------------------AGAATATTG-TGATTTATAATTTCTAGAT- 28 consensus_2219#1 ATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATA 120 * * * * * ***** * ** *** consensus_2219#0 -----GCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTG 83 consensus_2219#1 AACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTG 180 ************************ ****************************** consensus_2219#0 GAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTA 143 consensus_2219#1 GAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTA 240 *********************** ************************************ consensus_2219#0 CTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTA 203 consensus_2219#1 CTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTA 300 ************************************************************ consensus_2219#0 CTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTT 263 consensus_2219#1 CTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTT 360 ************************************************************ consensus_2219#0 CGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCAT 323 consensus_2219#1 CGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCAT 420 ********************** ************************************* consensus_2219#0 CTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCAT 383 consensus_2219#1 CTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT------------------- 461 ***************************************** consensus_2219#0 CGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATA 443 consensus_2219#1 ------------------------------------------------------------ consensus_2219#0 GTAGTAGTACTAATAATAGTAACCAATGGTAAGGT 478 consensus_2219#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||