cluster # 2220

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Schistosoma mansoni
cluster # 2220 cluster # 2220 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2220#0 length = 551 sequences # 1

consensus_2220#1 length = 473 sequences # 1

consensusID : consensus_2220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [GCCTCGAGGCCANGAATCGGCACGAGGAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGATTTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAACCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGAAGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACACTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTACTTCAATTCTGCTTTGTTTTCTTTCGTAGTT]

[+] EMBL CD083708             [GCCTCGAGGCCANGAATCGGCACGAGGAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGATTTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAACCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGAAGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACACTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTACTTCAATTCTGCTTTGTTTTCTTTCGTAGTT]




>consensus_2220#0
GCCTCGAGGCCANGAATCGGCACGAGGAGAAACACAATTCAGTTCGGTTATCGACCATCA
TCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAAC
AATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCA
ATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGA
TATCCGGATTACACAGATCCTATAGACAGGATGAATAGATTTGATCGAGACAGAGAAATA
CCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAACCAATACTTGAATATACAAT
TAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGAAGTAAGAATGTAGAGTACAT
GATATTATTCATTACCATACAATAGATTTTATTACTAACACTGCATATTCTACCTTTAGG
GTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTACTTCAATTCTGCTTTGTTTT
CTTTCGTAGTT

consensusID : consensus_2220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACGATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTGAATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTCCATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATACACAGATCCTATAGACAGGATGA]

[+] EMBL CD188474             [TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACGATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTGAATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTCCATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATACACAGATCCTATAGACAGGATGA]




>consensus_2220#1
TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACG
ATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTG
AATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTC
CATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTC
AGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTG
AGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTG
CATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATT
TGGATTTGAATGTTAATCGATATCCGGATACACAGATCCTATAGACAGGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2220#0      ------------------------------------------------------------
consensus_2220#1      TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACG 60
                                                                                  

consensus_2220#0      ------------------------------------------------------------
consensus_2220#1      ATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTG 120
                                                                                  

consensus_2220#0      ------------------------------------------------------------
consensus_2220#1      AATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTC 180
                                                                                  

consensus_2220#0      --------------GCCTCGAGGCCANGA-ATCGGCACGAG-----GAGAAACACAATTC 40
consensus_2220#1      CATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTC 240
                                         **  ***  * *    ** **       *************

consensus_2220#0      AGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTG 100
consensus_2220#1      AGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTG 300
                      ************************************************************

consensus_2220#0      AGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTG 160
consensus_2220#1      AGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTG 360
                      ************************************************************

consensus_2220#0      CATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATT 220
consensus_2220#1      CATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATT 420
                      ************************************************************

consensus_2220#0      TGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGAT 280
consensus_2220#1      TGGATTTGAATGTTAATCGATATCCGGAT-ACACAGATCCTATAGACAGGATGA------ 473
                      ***************************** ************************      

consensus_2220#0      TTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAA 340
consensus_2220#1      ------------------------------------------------------------
                                                                                  

consensus_2220#0      CCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGA 400
consensus_2220#1      ------------------------------------------------------------
                                                                                  

consensus_2220#0      AGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACA 460
consensus_2220#1      ------------------------------------------------------------
                                                                                  

consensus_2220#0      CTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTA 520
consensus_2220#1      ------------------------------------------------------------
                                                                                  

consensus_2220#0      CTTCAATTCTGCTTTGTTTTCTTTCGTAGTT 551
consensus_2220#1      -------------------------------