cluster # 2225

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Schistosoma mansoni
cluster # 2225 cluster # 2225 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2225#0 length = 482 sequences # 1

consensus_2225#1 length = 347 sequences # 1

consensusID : consensus_2225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [ATTGGCCCTGAGGCAGAATCGGCACGAGGCGGCCGGTCAGTCGAAGTGCACATGATTGTCCAACTTACATTGTGTACAACCATCAAAGGTATTGGTTACGAAACGGTCTTGGCAAGCAGTTCCCACTATGGCTAACTTTCCTGTGCAACATAACGGTCAAACAATCAGTAATCTCATGGGGAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAAACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCCACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGGCAGCTGACGCTATCTACTACGGTATAGCAAGTCGACAACCTGGATTAAGTCTTCGTGTAGCTGCACAATATACGCAGTTGATGCTTTATGAAGATGCCGATTGTGCTATGCTTCGTTTGATAGAATGTTTCACTGAGTCC]

[+] EMBL CD083857             [ATTGGCCCTGAGGCAGAATCGGCACGAGGCGGCCGGTCAGTCGAAGTGCACATGATTGTCCAACTTACATTGTGTACAACCATCAAAGGTATTGGTTACGAAACGGTCTTGGCAAGCAGTTCCCACTATGGCTAACTTTCCTGTGCAACATAACGGTCAAACAATCAGTAATCTCATGGGGAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAAACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCCACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGGCAGCTGACGCTATCTACTACGGTATAGCAAGTCGACAACCTGGATTAAGTCTTCGTGTAGCTGCACAATATACGCAGTTGATGCTTTATGAAGATGCCGATTGTGCTATGCTTCGTTTGATAGAATGTTTCACTGAGTCC]




>consensus_2225#0
ATTGGCCCTGAGGCAGAATCGGCACGAGGCGGCCGGTCAGTCGAAGTGCACATGATTGTC
CAACTTACATTGTGTACAACCATCAAAGGTATTGGTTACGAAACGGTCTTGGCAAGCAGT
TCCCACTATGGCTAACTTTCCTGTGCAACATAACGGTCAAACAATCAGTAATCTCATGGG
GAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAA
ACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCC
ACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGGCAGCTGACGCTATCTACT
ACGGTATAGCAAGTCGACAACCTGGATTAAGTCTTCGTGTAGCTGCACAATATACGCAGT
TGATGCTTTATGAAGATGCCGATTGTGCTATGCTTCGTTTGATAGAATGTTTCACTGAGT
CC

consensusID : consensus_2225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [ACAACTAATCTCATGGGGAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAAACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCCACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGTTGAGTTTCTAAAAGTCCATGGATTTAGGTGGTATCAAGTTGTGATATTTCTCATTTCTATAATGAGTTACCTCGCAGATATTGCTTCCGACGCATACTTGGTTTATACGTACTATATTCAGGGAGATTACTACTGGTCTAGTTTAACAATGACTTTTATGGTAGTTCC]

[+] EMBL CD116300             [ACAACTAATCTCATGGGGAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAAACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCCACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGTTGAGTTTCTAAAAGTCCATGGATTTAGGTGGTATCAAGTTGTGATATTTCTCATTTCTATAATGAGTTACCTCGCAGATATTGCTTCCGACGCATACTTGGTTTATACGTACTATATTCAGGGAGATTACTACTGGTCTAGTTTAACAATGACTTTTATGGTAGTTCC]




>consensus_2225#1
ACAACTAATCTCATGGGGAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACG
GATGCTTCGATCTCAAAACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCA
CATTCAAGTGCTCCTCCACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGTT
GAGTTTCTAAAAGTCCATGGATTTAGGTGGTATCAAGTTGTGATATTTCTCATTTCTATA
ATGAGTTACCTCGCAGATATTGCTTCCGACGCATACTTGGTTTATACGTACTATATTCAG
GGAGATTACTACTGGTCTAGTTTAACAATGACTTTTATGGTAGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2225#0      ATTGGCCCTGAGGCAGAATCGGCACGAGGCGGCCGGTCAGTCGAAGTGCACATGATTGTC 60
consensus_2225#1      ------------------------------------------------------------
                                                                                  

consensus_2225#0      CAACTTACATTGTGTACAACCATCAAAGGTATTGGTTACGAAACGGTCTTGGCAAGCAGT 120
consensus_2225#1      ------------------------------------------------------------
                                                                                  

consensus_2225#0      TCCCACTATGGCTAACTTTCCTGTGCAACATAACGGTCAAACAATCAGTAATCTCATGGG 180
consensus_2225#1      -------------------------------------------ACAACTAATCTCATGGG 17
                                                                 *  * ************

consensus_2225#0      GAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAA 240
consensus_2225#1      GAATAAGAGTGAAGTGGAATCACTTACTGTTTGTGATATTACGGATGCTTCGATCTCAAA 77
                      ************************************************************

consensus_2225#0      ACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCC 300
consensus_2225#1      ACAAAATTCTTTTGATGAACCATTCAGTTCCTTCGTTACTCCACATTCAAGTGCTCCTCC 137
                      ************************************************************

consensus_2225#0      ACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGGCAGCT------GACGCTA 354
consensus_2225#1      ACCATCTACTATTGTTCAGCCCGAGGATGACATAAGACTAGTTGAGTTTCTAAAAGTCCA 197
                      *****************************************     *       *  * *

consensus_2225#0      TCTACTACGGTA-TAGCAAGTCGACAA----------CCTGGATTAAGTCTTCGTGTAGC 403
consensus_2225#1      TGGATTTAGGTGGTATCAAGTTGTGATATTTCTCATTTCTATAATGAGTTACCTCGCAGA 257
                      *  * *  ***  ** ***** *  *            **  * * ***   *  * ** 

consensus_2225#0      TG-------CACAATATACGCAGTTGATGCTT--TATGAAGATGCCGATTGTGCTATGCT 454
consensus_2225#1      TATTGCTTCCGACGCATACTTGGTTTATACGTACTATATTCAGGGAGATTACTACTGGTC 317
                      *        *     ****   *** ** * *  ***    * *  ****       *  

consensus_2225#0      TCGTTTGATAGAATGTTTCACTG-AGTCC- 482
consensus_2225#1      TAGTTTAACAATGACTTTTATGGTAGTTCC 347
                      * **** * *     *** *  * *** *