cluster # 2239

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Schistosoma mansoni
cluster # 2239 cluster # 2239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2239#0 length = 381 sequences # 1

consensus_2239#1 length = 251 sequences # 1

consensusID : consensus_2239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCAGAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCCTAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCACAAAACTAGATGAGGCCCATA]

[+] EMBL CD084078             [CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCAGAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCCTAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCACAAAACTAGATGAGGCCCATA]




>consensus_2239#0
CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGT
CGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTG
TGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCA
GAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAAT
TGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCC
TAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCA
CAAAACTAGATGAGGCCCATA

consensusID : consensus_2239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG]

[-] EMBL CD166942             [ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG]




>consensus_2239#1
ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAGAGCTG
TTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGA
CATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAAAAATCGTCGTTATCA
AGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACA
AAACCATACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2239#0      CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGT 60
consensus_2239#1      ---------ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGT 51
                               ***************************************************

consensus_2239#0      CGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTG 120
consensus_2239#1      CGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTG 111
                      *** ******************  ************************************

consensus_2239#0      TGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCA 180
consensus_2239#1      TGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAA------- 164
                      *****************************************************       

consensus_2239#0      GAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAAT 240
consensus_2239#1      ---------------------------AAAATCGTCGTTATCAAGAGTATACTGAGAAAT 197
                                                 *********************************

consensus_2239#0      TGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCC 300
consensus_2239#1      TGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG------ 251
                      ******************************************************      

consensus_2239#0      TAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCA 360
consensus_2239#1      ------------------------------------------------------------
                                                                                  

consensus_2239#0      CAAAACTAGATGAGGCCCATA 381
consensus_2239#1      ---------------------