cluster # 2246

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Schistosoma mansoni
cluster # 2246 cluster # 2246 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2246#0 length = 550 sequences # 1

consensus_2246#1 length = 328 sequences # 1

consensusID : consensus_2246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATCGGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATTAGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTATTTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGTTTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAATTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTTCCATACTCACTTGACGATTCTGGTCATTTCAAAACCATTGCAAAGTTTGACTGTCGTGGTTTAGAATTTACTGAATTTTCTCCTCGTTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTTTGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAA]

[+] EMBL CD084161             [TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATCGGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATTAGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTATTTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGTTTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAATTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTTCCATACTCACTTGACGATTCTGGTCATTTCAAAACCATTGCAAAGTTTGACTGTCGTGGTTTAGAATTTACTGAATTTTCTCCTCGTTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTTTGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAA]




>consensus_2246#0
TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATC
GGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATT
AGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTAT
TTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGT
TTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAA
TTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTTCCATACTCACTT
GACGATTCTGGTCATTTCAAAACCATTGCAAAGTTTGACTGTCGTGGTTTAGAATTTACT
GAATTTTCTCCTCGTTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTTTGAT
GACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGAAGTC
AGCATACAAA

consensusID : consensus_2246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [CCCTGGCGGCGTACTTTCCATACTCACTTGAGCATTTGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTTACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTTGATGACATTTCATTAACAGATGAGATTTGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATATTTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACTTGT]

[-] EMBL AI559073             [CCCTGGCGGCGTACTTTCCATACTCACTTGAGCATTTGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTTACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTTGATGACATTTCATTAACAGATGAGATTTGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATATTTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACTTGT]




>consensus_2246#1
CCCTGGCGGCGTACTTTCCATACTCACTTGAGCATTTGGTCATTTCAAAACCCATTGCAA
AGTTTGACTCTCCGTGGTTTAGAATTTACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGC
TTCAAGTGTCAACTCCGATGCCGTTTTGATGACATTTCATTAACAGATGAGATTTGTGCG
ATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAAATTTTCAAAGTCAAATAATTA
AACTGAAATGTTAATAACTGAATATTTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTA
TATTATTATTCAAAAATAAAATACTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2246#0      TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATC 60
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      GGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATT 120
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      AGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTAT 180
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      TTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGT 240
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      TTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAA 300
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      TTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTT-CCATACTCACT 359
consensus_2246#1      --------------------------------CCCTGGCGGCGTACTTTCCATACTCACT 28
                                                       ****** ** ***** ***********

consensus_2246#0      TGACGATTCTGGTCATTTCAAAACC-ATTGCAAAGTTTGACTGTC-GTGGTTTAGAATTT 417
consensus_2246#1      TGAGCATT-TGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTT 87
                      ***  *** **************** **************** ** **************

consensus_2246#0      ACTGAATTTTCTCCTCG-TTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTT 476
consensus_2246#1      ACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTT 147
                      **** * ********** ****** ***************************** *****

consensus_2246#0      TGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGA 536
consensus_2246#1      -GATGACATTTCATTAACAGATGAGATTTG-TGCGATTATGATGAGAAAGGTAAATGTGA 205
                       ***************************** *****************************

consensus_2246#0      AGTCAGCATACAAA---------------------------------------------- 550
consensus_2246#1      AGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATAT 265
                      **************                                              

consensus_2246#0      ------------------------------------------------------------
consensus_2246#1      TTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACT 325
                                                                                  

consensus_2246#0      ---
consensus_2246#1      TGT 328