These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGATTTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATTACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACGTGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA] [+] EMBL CD084381 [GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGATTTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATTACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACGTGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA] consensusID : consensus_2256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [AATTCATTTGGAGTTAGACGGTCAATTTTTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTA] [+] EMBL CD202657 [AATTCATTTGGAGTTAGACGGTCAATTTTTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2256#0 GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGAT 60 consensus_2256#1 -------------------------AAT--TCATTTGGAGTTAGACGGTC-----AATTT 28 ** * **** ** ** * * ** * * consensus_2256#0 TTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTA 120 consensus_2256#1 TTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTA 88 ** *** * * ************************************************ consensus_2256#0 TCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTT 180 consensus_2256#1 TCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTT 148 ************************************************************ consensus_2256#0 CCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACC 240 consensus_2256#1 CCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACC 208 ************************************************************ consensus_2256#0 AGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGT 300 consensus_2256#1 AGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGT 268 ************************************************************ consensus_2256#0 TAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATT 360 consensus_2256#1 TAAATCTGGTGAGACAGCACTTA------------------------------------- 291 *********************** consensus_2256#0 ACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACG 420 consensus_2256#1 ------------------------------------------------------------ consensus_2256#0 TGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA 476 consensus_2256#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||