cluster # 2256

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Schistosoma mansoni
cluster # 2256 cluster # 2256 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2256#0 length = 476 sequences # 1

consensus_2256#1 length = 291 sequences # 1

consensusID : consensus_2256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGATTTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATTACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACGTGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA]

[+] EMBL CD084381             [GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGATTTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATTACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACGTGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA]




>consensus_2256#0
GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGAT
TTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTA
TCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTT
CCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACC
AGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGT
TAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATT
ACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACG
TGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA

consensusID : consensus_2256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [AATTCATTTGGAGTTAGACGGTCAATTTTTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTA]

[+] EMBL CD202657             [AATTCATTTGGAGTTAGACGGTCAATTTTTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTA]




>consensus_2256#1
AATTCATTTGGAGTTAGACGGTCAATTTTTTTTTTGTAAATTGATTAATTAACTCCTGCT
TTCAAAACTAATCAGTTATGTCAAAGTATCAGTCAAAACTGGATGTTGAGAAAACGCAAG
AAGCAATAAAGTTTCTAAGGAATTGTTTCCAGAAACAATTGTCAGCGAGACTAAATTTAT
TACGCGTATCTGCCCCACTATTTGTACCAGCCAACAGCGGATTACAAGATGATTTATCCG
GTGAGGAACGTGCAATTATGTTCGACGTTAAATCTGGTGAGACAGCACTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2256#0      GAGGCCNAGACTCGGCACGAGGCGAGATCATGATTTAGATTTTAATGTTCTTACCGAGAT 60
consensus_2256#1      -------------------------AAT--TCATTTGGAGTTAGACGGTC-----AATTT 28
                                                **  * **** ** **  * * **      *  *

consensus_2256#0      TTACTTTTTCAGTTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTA 120
consensus_2256#1      TTTTTTTGTAAATTGATTAATTAACTCCTGCTTTCAAAACTAATCAGTTATGTCAAAGTA 88
                      **  *** * * ************************************************

consensus_2256#0      TCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTT 180
consensus_2256#1      TCAGTCAAAACTGGATGTTGAGAAAACGCAAGAAGCAATAAAGTTTCTAAGGAATTGTTT 148
                      ************************************************************

consensus_2256#0      CCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACC 240
consensus_2256#1      CCAGAAACAATTGTCAGCGAGACTAAATTTATTACGCGTATCTGCCCCACTATTTGTACC 208
                      ************************************************************

consensus_2256#0      AGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGT 300
consensus_2256#1      AGCCAACAGCGGATTACAAGATGATTTATCCGGTGAGGAACGTGCAATTATGTTCGACGT 268
                      ************************************************************

consensus_2256#0      TAAATCTGGTGAGACAGCACTTATTAATCAATCCTTGGCCAAATGGAAACGTATGGCATT 360
consensus_2256#1      TAAATCTGGTGAGACAGCACTTA------------------------------------- 291
                      ***********************                                     

consensus_2256#0      ACACAAATATAAGCTAAATCAATACGATGGAATTTACACAGATATGAATGCGATCAGACG 420
consensus_2256#1      ------------------------------------------------------------
                                                                                  

consensus_2256#0      TGATGAAGTTGTCTCTCCACTTCACTCATATTATGTTGACCAATGGGACTGGGAGA 476
consensus_2256#1      --------------------------------------------------------