cluster # 2267

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Schistosoma mansoni
cluster # 2267 cluster # 2267 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2267#0 length = 523 sequences # 1

consensus_2267#1 length = 343 sequences # 1

consensusID : consensus_2267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [TGGATCTGGGTCTGGTTCGTTTCGCTTTAAAGTATAATTATTTTAAAGATCGAGTTTACCCCCTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATTTAGCTCTGGGTCCCATAGCAATTTAGCAGCTGTGAAAGAGATCGGTCGAACACTGCTCATAATGGGCTAAAAAACAAAATAAAAAGGGGTAATTAGAGAAATAGAACTATTACTTCTGGAAGGCTGGTGACTTTGTGATGGAAAGATAATTAGAGTAAACGTAACTTGCCGATTCATACTCAACACTGATTGAGAAAATGGTAAAGGTATACATTCTAACTATAACAGAAACAATCATGCACCAAAGTTATTATGACGAAGTTTGCCCAAACCCCATGCCAAGGCAAAGTCAAACGAAAAGCAGACCACCTCCTTCAAAATGTGGTTCAAAGGTTCATAGATTACCATCTAACTAACAAAAACAAAATATACAGATTCCGTAGTCAAAACAAATAACGCGCACTGATGGGCCA]

[+] EMBL CD087114             [TGGATCTGGGTCTGGTTCGTTTCGCTTTAAAGTATAATTATTTTAAAGATCGAGTTTACCCCCTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATTTAGCTCTGGGTCCCATAGCAATTTAGCAGCTGTGAAAGAGATCGGTCGAACACTGCTCATAATGGGCTAAAAAACAAAATAAAAAGGGGTAATTAGAGAAATAGAACTATTACTTCTGGAAGGCTGGTGACTTTGTGATGGAAAGATAATTAGAGTAAACGTAACTTGCCGATTCATACTCAACACTGATTGAGAAAATGGTAAAGGTATACATTCTAACTATAACAGAAACAATCATGCACCAAAGTTATTATGACGAAGTTTGCCCAAACCCCATGCCAAGGCAAAGTCAAACGAAAAGCAGACCACCTCCTTCAAAATGTGGTTCAAAGGTTCATAGATTACCATCTAACTAACAAAAACAAAATATACAGATTCCGTAGTCAAAACAAATAACGCGCACTGATGGGCCA]




>consensus_2267#0
TGGATCTGGGTCTGGTTCGTTTCGCTTTAAAGTATAATTATTTTAAAGATCGAGTTTACC
CCCTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATTTAGCTCTGGG
TCCCATAGCAATTTAGCAGCTGTGAAAGAGATCGGTCGAACACTGCTCATAATGGGCTAA
AAAACAAAATAAAAAGGGGTAATTAGAGAAATAGAACTATTACTTCTGGAAGGCTGGTGA
CTTTGTGATGGAAAGATAATTAGAGTAAACGTAACTTGCCGATTCATACTCAACACTGAT
TGAGAAAATGGTAAAGGTATACATTCTAACTATAACAGAAACAATCATGCACCAAAGTTA
TTATGACGAAGTTTGCCCAAACCCCATGCCAAGGCAAAGTCAAACGAAAAGCAGACCACC
TCCTTCAAAATGTGGTTCAAAGGTTCATAGATTACCATCTAACTAACAAAAACAAAATAT
ACAGATTCCGTAGTCAAAACAAATAACGCGCACTGATGGGCCA

consensusID : consensus_2267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [CGTATGATTTTGGATGATAGTATATCTCGCTTCTATAATCGTACCGAATTTACGACACATGTCTGCGAGGTTCTTAAATGTGATGTTATCATTAAGATTTGAGAAAGTGACCTCTTTTTCTGGTTTTTCACCCACGTAATATAAATCGATCTGTCACATATTGCTCCTAAAGTAAATTGCGAAATACCTTGAAACTCGGGATCGGGAGATCAACAATCGTTTTCTTGCAAAAACTTCTAAAGTGCAAAGGGCGTCTAGGATCAACCACTGGATCTGGGTCTGGTTCGTTTCGCCCCTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATT]

[+] EMBL CD064627             [CGTATGATTTTGGATGATAGTATATCTCGCTTCTATAATCGTACCGAATTTACGACACATGTCTGCGAGGTTCTTAAATGTGATGTTATCATTAAGATTTGAGAAAGTGACCTCTTTTTCTGGTTTTTCACCCACGTAATATAAATCGATCTGTCACATATTGCTCCTAAAGTAAATTGCGAAATACCTTGAAACTCGGGATCGGGAGATCAACAATCGTTTTCTTGCAAAAACTTCTAAAGTGCAAAGGGCGTCTAGGATCAACCACTGGATCTGGGTCTGGTTCGTTTCGCCCCTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATT]




>consensus_2267#1
CGTATGATTTTGGATGATAGTATATCTCGCTTCTATAATCGTACCGAATTTACGACACAT
GTCTGCGAGGTTCTTAAATGTGATGTTATCATTAAGATTTGAGAAAGTGACCTCTTTTTC
TGGTTTTTCACCCACGTAATATAAATCGATCTGTCACATATTGCTCCTAAAGTAAATTGC
GAAATACCTTGAAACTCGGGATCGGGAGATCAACAATCGTTTTCTTGCAAAAACTTCTAA
AGTGCAAAGGGCGTCTAGGATCAACCACTGGATCTGGGTCTGGTTCGTTTCGCCCCTCTA
CAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2267#0      ----TGGATCTGGGTC-TGGTTCGTTTCGCTTTAA--AGTATAATTATTTTAAAGATCGA 53
consensus_2267#1      CGTATGATTTTGGATGATAGTATATCTCGCTTCTATAATCGTACCGAATTTACGACACAT 60
                          **  * *** *  * **   * ******  *  *   **   * ****     *  

consensus_2267#0      GTTTACCCC-CTCTACAATGCCATCAACTCGATATAAAGGAGTTCGACAAGATGGATTTA 112
consensus_2267#1      GTCTGCGAGGTTCTTAAATGTGATG---TTATCATTAAG--ATTTGAGAAAGTGACCTCT 115
                      ** * *     ***  ****  **    *    ** ***   ** ** **  **   *  

consensus_2267#0      GCTCTGGGTCCCATAGCAATTTAGCAGCTGTGAAAGAGATCGGTCGAACACTGCTCATAA 172
consensus_2267#1      TTTTCTGGTTTTTCACCCACGTAATAT-----AAATCGATCTGTCACATATTGCTCCTAA 170
                        *   ***     * * *  **  *      ***  **** ***  * * ***** ***

consensus_2267#0      --TGGGCTAAAAAACAAAATAAAAAGGGGTAATTAGAGAAATAGAACTATTACTTCTGGA 230
consensus_2267#1      AGTAAATTGCGAAATACCTTGAAACTCGGGATCGGGAGATCAACAATCGTTTTCTTGCAA 230
                        *    *   *** *   * ***   ** *    ****   * **   **   *    *

consensus_2267#0      AGGCTGGTGACTTTGTGATGGAAAGATAATTAGAGTAAACGTAACTTG--CCGATTCATA 288
consensus_2267#1      AAACTTCTAAAGT-GCAAAGGGCGTCTAGGATCAACCACTGGATCTGGGTCTGGTTCGT- 288
                      *  **  * *  * *  * **     **     *   *  * * ** *  * * *** * 

consensus_2267#0      CTCAACACTGATTGAGAAAATGGTAAAGGTATACATTCTAACTATAACAGAAACAATCAT 348
consensus_2267#1      TTCGCCCCTCTACAATGCCATCAACTCGATATAAA---GGAGTTCGACAAGATGGATT-- 343
                       **  * **     *    **      * **** *     * *   ***  *   **   

consensus_2267#0      GCACCAAAGTTATTATGACGAAGTTTGCCCAAACCCCATGCCAAGGCAAAGTCAAACGAA 408
consensus_2267#1      ------------------------------------------------------------
                                                                                  

consensus_2267#0      AAGCAGACCACCTCCTTCAAAATGTGGTTCAAAGGTTCATAGATTACCATCTAACTAACA 468
consensus_2267#1      ------------------------------------------------------------
                                                                                  

consensus_2267#0      AAAACAAAATATACAGATTCCGTAGTCAAAACAAATAACGCGCACTGATGGGCCA 523
consensus_2267#1      -------------------------------------------------------