cluster # 2278

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Schistosoma mansoni
cluster # 2278 cluster # 2278 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2278#0 length = 393 sequences # 1

consensus_2278#1 length = 383 sequences # 1

consensusID : consensus_2278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGAGAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATGCATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAAAATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTACGGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAATACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGTGAAGCAAATACGTCTTCTTTAGGAATGGTGAAT]

[+] EMBL CD201313             [GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGAGAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATGCATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAAAATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTACGGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAATACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGTGAAGCAAATACGTCTTCTTTAGGAATGGTGAAT]




>consensus_2278#0
GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGA
GAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATG
CATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAA
AATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTAC
GGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAA
TACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGT
GAAGCAAATACGTCTTCTTTAGGAATGGTGAAT

consensusID : consensus_2278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGAGAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACGCATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAAAATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAGGGTGAGGTGACTAACAACCTCTCCTGAGTGATAATGCTTATATGTGTCAGGAAATACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGATGTAGCGAATACGTTTTCTTTGGGAGCGATGAAC]

[+] EMBL CD084534             [TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGAGAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACGCATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAAAATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAGGGTGAGGTGACTAACAACCTCTCCTGAGTGATAATGCTTATATGTGTCAGGAAATACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGATGTAGCGAATACGTTTTCTTTGGGAGCGATGAAC]




>consensus_2278#1
TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGAGAAC
TGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACGCATG
CGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAAAATC
AGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAGGGTG
AGGTGACTAACAACCTCTCCTGAGTGATAATGCTTATATGTGTCAGGAAATACTGGAGTG
GTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGATGTAGCGAATA
CGTTTTCTTTGGGAGCGATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2278#0      GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGA 60
consensus_2278#1      ----TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGA 56
                          **** ***  *****************  **** ***** **** ***********

consensus_2278#0      GAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATG 120
consensus_2278#1      GAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACG 116
                      ***  ************ *************************** ************ *

consensus_2278#0      CATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAA 180
consensus_2278#1      CATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAA 176
                      ****** **** ** ***** ******************* ******** *** ** ***

consensus_2278#0      AATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTAC 240
consensus_2278#1      AATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAG 236
                      ********* ****   *********** ****** ***  ***** ** **** * ** 

consensus_2278#0      GGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAA 300
consensus_2278#1      GGTGAGGTGACTAACAACCTCTCCT----GAGTGATAATGCTTATATGTGTC--AGGAAA 290
                      **** ** *** **** **** ***    ***** * ******** ******  *** **

consensus_2278#0      TACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGT 360
consensus_2278#1      TACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGAT 350
                      ***  * *  *** ** *** *********** * ** ** ****  *********** *

consensus_2278#0      GAAGCAAATACGTCTTCTTTAGGAATGGTGAAT 393
consensus_2278#1      GTAGCGAATACGTTTTCTTTGGGAGCGATGAAC 383
                      * *** ******* ****** ***  * ****