cluster # 2295

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Schistosoma mansoni
cluster # 2295 cluster # 2295 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2295#0 length = 364 sequences # 1

consensus_2295#1 length = 352 sequences # 1

consensusID : consensus_2295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCCAGAGAAGAACAACAGTTTGGTTATTATGCACATATTGAAACTTAATATCGTAAACTCTTACTGTTATCAGGCCTTGACGAATCTCTTTGAAATCATGATCTAAAAGACTAACACTAAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAACTGAATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTATTCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCGATGAATAATCACAGGGGTT]

[+] EMBL CD186949             [AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCCAGAGAAGAACAACAGTTTGGTTATTATGCACATATTGAAACTTAATATCGTAAACTCTTACTGTTATCAGGCCTTGACGAATCTCTTTGAAATCATGATCTAAAAGACTAACACTAAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAACTGAATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTATTCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCGATGAATAATCACAGGGGTT]




>consensus_2295#0
AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCCAGAGAAGA
ACAACAGTTTGGTTATTATGCACATATTGAAACTTAATATCGTAAACTCTTACTGTTATC
AGGCCTTGACGAATCTCTTTGAAATCATGATCTAAAAGACTAACACTAAAGCACATAGAT
TTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAACTGAATTAGAGGCTTAGAT
GGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTATTCGTCGAACAGACAC
TGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCGATGAATAATCACAGG
GGTT

consensusID : consensus_2295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [GCCTCATTAATAGCGTTAATAAATCAGATGATCTCCAGTGTTTGTTCGACGAATACAAGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATATGTGAATTCATTTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAACAAATTTTAAGATTTCCATCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCAGTCATTGAAGTGATGAAACCAATCTTACCTAACCATCCTGATACTTGAAAATGCTTTACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCTATCACTG]

[+] EMBL CD064815             [GCCTCATTAATAGCGTTAATAAATCAGATGATCTCCAGTGTTTGTTCGACGAATACAAGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATATGTGAATTCATTTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAACAAATTTTAAGATTTCCATCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCAGTCATTGAAGTGATGAAACCAATCTTACCTAACCATCCTGATACTTGAAAATGCTTTACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCTATCACTG]




>consensus_2295#1
GCCTCATTAATAGCGTTAATAAATCAGATGATCTCCAGTGTTTGTTCGACGAATACAAGA
CGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATATGTGAATTCATTTTG
TTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAACAAATTTTAAGATTT
CCATCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCAGTCATTGAAGTG
ATGAAACCAATCTTACCTAACCATCCTGATACTTGAAAATGCTTTACAAAAAAAAGAAAA
TATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCTATCACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2295#0      --------AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCC 52
consensus_2295#1      GCCTCATTAATAGCGTTAATAAATCAGATGATC--TCCAGTGTTTGTTCGACGAATA-CA 57
                              ****    ***  * * *      *  * *  * **    **   * *  * 

consensus_2295#0      AGAGAAGAACAACAGTTTGGTTATTATGCACAT-ATTGAAACTTAATATCGTAAACTCTT 111
consensus_2295#1      AGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATAT-GTGAATTCAT 116
                      ***  ****  * **** *  * **  *  **  * * *    * **** ** ** ** *

consensus_2295#0      ACTGTTA--TCAGGCCTTGACGAATCTC--TTTGAAATCATGATCTAAAAGACTAACACT 167
consensus_2295#1      TTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAA---CAAATTTT 173
                        ****   * *    ** ** ** ***  **   *** ** ** ****   * **   *

consensus_2295#0      AAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAA--CTGA 225
consensus_2295#1      AAGATTTCCA-----TCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCA 228
                      **       *     **   ***   ** *  *       *   *    *  **  ** *

consensus_2295#0      ATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTAT 285
consensus_2295#1      GTCATTGAAGT-GATGAAACCAATCTTACCTAACCATC--CTGATACTTGAAAATGCTTT 285
                       * *  *   * **** *    *   **  * * * *   **   * *      *  * *

consensus_2295#0      TCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCG 345
consensus_2295#1      ACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCT 345
                       *    ** *** * *    *  *    **     **   **  *  **      **** 

consensus_2295#0      ATGAATAATCACAGGGGTT 364
consensus_2295#1      ATCACTG------------ 352
                      ** * *