These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGATCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGATCGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGACATTTACGCGTAAGGTCAACTCTGATCACATTACACTTAGGCCGATGAAGTTTTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA] [+] EMBL CD064941 [ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGATCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGATCGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGACATTTACGCGTAAGGTCAACTCTGATCACATTACACTTAGGCCGATGAAGTTTTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA] consensusID : consensus_2314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGAGGCCAGTGATGTCAACAGCTGGGCACGGAATANAAGTCGGATCCTTTCAAAGTCGTCCGCC] [+] EMBL CD202205 [ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGAGGCCAGTGATGTCAACAGCTGGGCACGGAATANAAGTCGGATCCTTTCAAAGTCGTCCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2314#0 ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGA 60 consensus_2314#1 ------------------------------------------------------------ consensus_2314#0 TCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGAT 120 consensus_2314#1 ------------------------------------------------------------ consensus_2314#0 CGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGC 180 consensus_2314#1 -------ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGC 53 ****************** ********************************** consensus_2314#0 CTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAA 240 consensus_2314#1 CTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAA 113 ************************************************************ consensus_2314#0 CATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTC 300 consensus_2314#1 CATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTC 173 ************************************************************ consensus_2314#0 AAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCA 360 consensus_2314#1 AAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCA 233 ************************************************************ consensus_2314#0 GTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAA 420 consensus_2314#1 GTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAA 293 ************************************************************ consensus_2314#0 AATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTG 480 consensus_2314#1 AATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTG 353 ************************************************************ consensus_2314#0 AATGGGACATTTACGCGTAAGGTCAACT-CTGATCACATTACACTTAGGCCGATGAAGTT 539 consensus_2314#1 AATGGGAGGCC----AGTGATGTCAACAGCTGGGCACGGAATAN--AAGTCGG---ATCC 404 ******* ** * ****** *** *** * * * * ** * consensus_2314#0 TTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA 594 consensus_2314#1 TTTCAAAGTCGTCCGCC-------------------------------------- 421 *** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||