These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAAATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTTTTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTATGTTTTTGAGGGAAATTGATGATTTA] [+] EMBL CD085338 [GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAAATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTTTTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTATGTTTTTGAGGGAAATTGATGATTTA] consensusID : consensus_2329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [AGCCTTGGTTTGGATTTTTTGTTGCAAAATGGGAACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTTTTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAGTTTTTTGAGGGAAATTGATGATTTA] [+] EMBL CD085334 [AGCCTTGGTTTGGATTTTTTGTTGCAAAATGGGAACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTTTTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAGTTTTTTGAGGGAAATTGATGATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2329#0 GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAA 60 consensus_2329#1 -----------------------AGCCTTGGTTTGGATTTT----TTGTTGCAAAATGGG 33 ***** * * * ** * * * consensus_2329#0 ATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTT 120 consensus_2329#1 AACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTT 93 * * * * * ** *** * * * ** * *** ** consensus_2329#0 TTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAT 180 consensus_2329#1 TTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAG 153 ** *** ************ *************************************** consensus_2329#0 GTTTTTGAGGGAAATTGATGATTTA 205 consensus_2329#1 TTTTTTGAGGGAAATTGATGATTTA 178 ************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||